net.sourceforge.phpeclipse/src/net/sourceforge/phpdt/internal/core/JavaProject.java

   1 /*******************************************************************************
   2  * Copyright (c) 2000, 2003 IBM Corporation and others.
   3  * All rights reserved. This program and the accompanying materials
   4  * are made available under the terms of the Common Public License v1.0
   5  * which accompanies this distribution, and is available at
   6  * http://www.eclipse.org/legal/cpl-v10.html
   7  *
   8  * Contributors:
   9  *     IBM Corporation - initial API and implementation
  10  *******************************************************************************/
  11 package net.sourceforge.phpdt.internal.core;
  12
  13 import java.io.BufferedInputStream;
  14 import java.io.BufferedOutputStream;
  15 import java.io.ByteArrayInputStream;
  16 import java.io.ByteArrayOutputStream;
  17 import java.io.File;
  18 import java.io.FileInputStream;
  19 import java.io.FileOutputStream;
  20 import java.io.IOException;
  21 import java.io.InputStream;
  22 import java.io.OutputStream;
  23 import java.io.OutputStreamWriter;
  24 import java.io.StringReader;
  25 import java.util.ArrayList;
  26 import java.util.HashMap;
  27 import java.util.HashSet;
  28 import java.util.Hashtable;
  29 import java.util.Iterator;
  30 import java.util.List;
  31 import java.util.Map;
  32
  33 import javax.xml.parsers.DocumentBuilder;
  34 import javax.xml.parsers.DocumentBuilderFactory;
  35 import javax.xml.parsers.ParserConfigurationException;
  36 import javax.xml.parsers.SAXParserFactory;
  37
  38 import net.sourceforge.phpdt.core.IClasspathEntry;
  39 import net.sourceforge.phpdt.core.IJavaElement;
  40 import net.sourceforge.phpdt.core.IJavaModelMarker;
  41 import net.sourceforge.phpdt.core.IJavaModelStatus;
  42 import net.sourceforge.phpdt.core.IJavaModelStatusConstants;
  43 import net.sourceforge.phpdt.core.IJavaProject;
  44 import net.sourceforge.phpdt.core.IPackageFragment;
  45 import net.sourceforge.phpdt.core.IPackageFragmentRoot;
  46 import net.sourceforge.phpdt.core.JavaModelException;
  47 import net.sourceforge.phpdt.internal.codeassist.ISearchableNameEnvironment;
  48 import net.sourceforge.phpdt.internal.compiler.util.ObjectVector;
  49 import net.sourceforge.phpdt.internal.corext.Assert;
  50 import net.sourceforge.phpeclipse.LoadPathEntry;
  51 import net.sourceforge.phpeclipse.PHPCore;
  52 import net.sourceforge.phpeclipse.PHPeclipsePlugin;
  53
  54 import org.apache.xerces.dom.DocumentImpl;
  55 import org.apache.xml.serialize.Method;
  56 import org.apache.xml.serialize.OutputFormat;
  57 import org.apache.xml.serialize.Serializer;
  58 import org.apache.xml.serialize.SerializerFactory;
  59 import org.eclipse.core.resources.ICommand;
  60 import org.eclipse.core.resources.IFile;
  61 import org.eclipse.core.resources.IFolder;
  62 import org.eclipse.core.resources.IMarker;
  63 import org.eclipse.core.resources.IProject;
  64 import org.eclipse.core.resources.IProjectDescription;
  65 import org.eclipse.core.resources.IProjectNature;
  66 import org.eclipse.core.resources.IResource;
  67 import org.eclipse.core.resources.IWorkspace;
  68 import org.eclipse.core.resources.IWorkspaceRoot;
  69 import org.eclipse.core.resources.ResourcesPlugin;
  70 import org.eclipse.core.runtime.CoreException;
  71 import org.eclipse.core.runtime.IPath;
  72 import org.eclipse.core.runtime.IProgressMonitor;
  73 import org.eclipse.core.runtime.Path;
  74 import org.eclipse.core.runtime.Preferences;
  75 import org.eclipse.core.runtime.QualifiedName;
  76 import org.w3c.dom.Document;
  77 import org.w3c.dom.Element;
  78 import org.w3c.dom.Node;
  79 import org.w3c.dom.NodeList;
  80 import org.xml.sax.Attributes;
  81 import org.xml.sax.ContentHandler;
  82 import org.xml.sax.InputSource;
  83 import org.xml.sax.Locator;
  84 import org.xml.sax.SAXException;
  85 import org.xml.sax.XMLReader;
  86
  87 /**
  88  * Handle for a Java Project.
  89  *
  90  * <p>A Java Project internally maintains a devpath that corresponds
  91  * to the project's classpath. The classpath may include source folders
  92  * from the current project; jars in the current project, other projects,
  93  * and the local file system; and binary folders (output location) of other
  94  * projects. The Java Model presents source elements corresponding to output
  95  * .class files in other projects, and thus uses the devpath rather than
  96  * the classpath (which is really a compilation path). The devpath mimics
  97  * the classpath, except has source folder entries in place of output
  98  * locations in external projects.
  99  *
 100  * <p>Each JavaProject has a NameLookup facility that locates elements
 101  * on by name, based on the devpath.
 102  *
 103  * @see IJavaProject
 104  */
 105 public class JavaProject
 106         extends Openable
 107         implements IJavaProject , IProjectNature {
 108
 109         /**
 110          * Whether the underlying file system is case sensitive.
 111          */
 112         protected static final boolean IS_CASE_SENSITIVE = !new File("Temp").equals(new File("temp")); //$NON-NLS-1$ //$NON-NLS-2$
 113
 114         /**
 115          * An empty array of strings indicating that a project doesn't have any prerequesite projects.
 116          */
 117         protected static final String[] NO_PREREQUISITES = new String[0];
 118
 119         /**
 120          * The platform project this <code>IJavaProject</code> is based on
 121          */
 122         protected IProject fProject;
 123         protected List fLoadPathEntries;
 124         protected boolean fScratched;
 125
 126         /**
 127          * Name of file containing project classpath
 128          */
 129         public static final String CLASSPATH_FILENAME = ".classpath";  //$NON-NLS-1$
 130
 131         /**
 132          * Name of file containing custom project preferences
 133          */
 134         public static final String PREF_FILENAME = ".jprefs";  //$NON-NLS-1$
 135
 136         /**
 137          * Value of the project's raw classpath if the .classpath file contains invalid entries.
 138          */
 139         public static final IClasspathEntry[] INVALID_CLASSPATH = new IClasspathEntry[0];
 140
 141         private static final String CUSTOM_DEFAULT_OPTION_VALUE = "#\r\n\r#custom-non-empty-default-value#\r\n\r#"; //$NON-NLS-1$
 142
 143         /**
 144          * Returns a canonicalized path from the given external path.
 145          * Note that the return path contains the same number of segments
 146          * and it contains a device only if the given path contained one.
 147          * @see java.io.File for the definition of a canonicalized path
 148          */
 149         public static IPath canonicalizedPath(IPath externalPath) {
 150
 151                 if (externalPath == null)
 152                         return null;
 153
 154                 if (JavaModelManager.VERBOSE) {
 155                         System.out.println("JAVA MODEL - Canonicalizing " + externalPath.toString()); //$NON-NLS-1$
 156                 }
 157
 158                 if (IS_CASE_SENSITIVE) {
 159                         if (JavaModelManager.VERBOSE) {
 160                                 System.out.println("JAVA MODEL - Canonical path is original path (file system is case sensitive)"); //$NON-NLS-1$
 161                         }
 162                         return externalPath;
 163                 }
 164
 165                 // if not external path, return original path
 166                 IWorkspace workspace = ResourcesPlugin.getWorkspace();
 167                 if (workspace == null) return externalPath; // protection during shutdown (30487)
 168                 if (workspace.getRoot().findMember(externalPath) != null) {
 169                         if (JavaModelManager.VERBOSE) {
 170                                 System.out.println("JAVA MODEL - Canonical path is original path (member of workspace)"); //$NON-NLS-1$
 171                         }
 172                         return externalPath;
 173                 }
 174
 175                 IPath canonicalPath = null;
 176                 try {
 177                         canonicalPath =
 178                                 new Path(new File(externalPath.toOSString()).getCanonicalPath());
 179                 } catch (IOException e) {
 180                         // default to original path
 181                         if (JavaModelManager.VERBOSE) {
 182                                 System.out.println("JAVA MODEL - Canonical path is original path (IOException)"); //$NON-NLS-1$
 183                         }
 184                         return externalPath;
 185                 }
 186
 187                 IPath result;
 188                 int canonicalLength = canonicalPath.segmentCount();
 189                 if (canonicalLength == 0) {
 190                         // the java.io.File canonicalization failed
 191                         if (JavaModelManager.VERBOSE) {
 192                                 System.out.println("JAVA MODEL - Canonical path is original path (canonical path is empty)"); //$NON-NLS-1$
 193                         }
 194                         return externalPath;
 195                 } else if (externalPath.isAbsolute()) {
 196                         result = canonicalPath;
 197                 } else {
 198                         // if path is relative, remove the first segments that were added by the java.io.File canonicalization
 199                         // e.g. 'lib/classes.zip' was converted to 'd:/myfolder/lib/classes.zip'
 200                         int externalLength = externalPath.segmentCount();
 201                         if (canonicalLength >= externalLength) {
 202                                 result = canonicalPath.removeFirstSegments(canonicalLength - externalLength);
 203                         } else {
 204                                 if (JavaModelManager.VERBOSE) {
 205                                         System.out.println("JAVA MODEL - Canonical path is original path (canonical path is " + canonicalPath.toString() + ")"); //$NON-NLS-1$ //$NON-NLS-2$
 206                                 }
 207                                 return externalPath;
 208                         }
 209                 }
 210
 211                 // keep device only if it was specified (this is because File.getCanonicalPath() converts '/lib/classed.zip' to 'd:/lib/classes/zip')
 212                 if (externalPath.getDevice() == null) {
 213                         result = result.setDevice(null);
 214                 }
 215                 if (JavaModelManager.VERBOSE) {
 216                         System.out.println("JAVA MODEL - Canonical path is " + result.toString()); //$NON-NLS-1$
 217                 }
 218                 return result;
 219         }
 220
 221         /**
 222          * Constructor needed for <code>IProject.getNature()</code> and <code>IProject.addNature()</code>.
 223          *
 224          * @see #setProject
 225          */
 226         public JavaProject() {
 227                 super(JAVA_PROJECT, null, null);
 228         }
 229
 230         public JavaProject(IProject project, IJavaElement parent) {
 231                 super(JAVA_PROJECT, parent, project.getName());
 232                 fProject = project;
 233         }
 234         public void addLoadPathEntry(IProject anotherPHPProject) {
 235                 fScratched = true;
 236
 237                 LoadPathEntry newEntry = new LoadPathEntry(anotherPHPProject);
 238                 getLoadPathEntries().add(newEntry);
 239         }
 240
 241         public void configure() throws CoreException {
 242                 //      get project description and then the associated build commands
 243                 IProjectDescription desc = fProject.getDescription();
 244                 ICommand[] commands = desc.getBuildSpec();
 245
 246                 // determine if builder already associated
 247                 boolean found = false;
 248                 for (int i = 0; i < commands.length; ++i) {
 249                         if (commands[i].getBuilderName().equals(PHPeclipsePlugin.BUILDER_PARSER_ID)) {
 250                                 found = true;
 251                                 break;
 252                         }
 253                 }
 254
 255                 // add builder if not already in project
 256                 if (!found) {
 257                         ICommand command = desc.newCommand();
 258                         command.setBuilderName(PHPeclipsePlugin.BUILDER_PARSER_ID);
 259                         ICommand[] newCommands = new ICommand[commands.length + 1];
 260
 261                         // Add it before other builders.
 262                         System.arraycopy(commands, 0, newCommands, 1, commands.length);
 263                         newCommands[0] = command;
 264                         desc.setBuildSpec(newCommands);
 265                         fProject.setDescription(desc, null);
 266                 }
 267         }
 268
 269         protected void loadLoadPathEntries() {
 270                         fLoadPathEntries = new ArrayList();
 271
 272                         IFile loadPathsFile = getLoadPathEntriesFile();
 273
 274                         XMLReader reader = null;
 275                         try {
 276                                 reader = SAXParserFactory.newInstance().newSAXParser().getXMLReader();
 277                                 reader.setContentHandler(getLoadPathEntriesContentHandler());
 278                                 reader.parse(new InputSource(loadPathsFile.getContents()));
 279                         } catch (Exception e) {
 280                                 //the file is nonextant or unreadable
 281                         }
 282                 }
 283
 284         public List getLoadPathEntries() {
 285                 if (fLoadPathEntries == null) {
 286                         loadLoadPathEntries();
 287                 }
 288
 289                 return fLoadPathEntries;
 290         }
 291
 292         protected ContentHandler getLoadPathEntriesContentHandler() {
 293                 return new ContentHandler() {
 294                         public void characters(char[] arg0, int arg1, int arg2) throws SAXException {
 295                         }
 296
 297                         public void endDocument() throws SAXException {
 298                         }
 299
 300                         public void endElement(String arg0, String arg1, String arg2) throws SAXException {
 301                         }
 302
 303                         public void endPrefixMapping(String arg0) throws SAXException {
 304                         }
 305
 306                         public void ignorableWhitespace(char[] arg0, int arg1, int arg2) throws SAXException {
 307                         }
 308
 309                         public void processingInstruction(String arg0, String arg1) throws SAXException {
 310                         }
 311
 312                         public void setDocumentLocator(Locator arg0) {
 313                         }
 314
 315                         public void skippedEntity(String arg0) throws SAXException {
 316                         }
 317
 318                         public void startDocument() throws SAXException {
 319                         }
 320
 321                         public void startElement(String namespaceURI, String localName, String qName, Attributes atts) throws SAXException {
 322                                 if ("pathentry".equals(qName))
 323                                         if ("project".equals(atts.getValue("type"))) {
 324                                                 IPath referencedProjectPath = new Path(atts.getValue("path"));
 325                                                 IProject referencedProject = getProject(referencedProjectPath.lastSegment());
 326                                                 fLoadPathEntries.add(new LoadPathEntry(referencedProject));
 327                                         }
 328                         }
 329
 330                         public void startPrefixMapping(String arg0, String arg1) throws SAXException {
 331                         }
 332                 };
 333         }
 334
 335         protected IFile getLoadPathEntriesFile() {
 336                 return fProject.getFile(".loadpath");
 337         }
 338
 339         protected String getLoadPathXML() {
 340                 StringBuffer buffer = new StringBuffer();
 341                 buffer.append("<?xml version=\"1.0\" encoding=\"UTF-8\"?><loadpath>");
 342
 343                 Iterator pathEntriesIterator = fLoadPathEntries.iterator();
 344
 345                 while (pathEntriesIterator.hasNext()) {
 346                         LoadPathEntry entry = (LoadPathEntry) pathEntriesIterator.next();
 347                         buffer.append(entry.toXML());
 348                 }
 349
 350                 buffer.append("</loadpath>");
 351                 return buffer.toString();
 352         }
 353         /**
 354          * Adds a builder to the build spec for the given project.
 355          */
 356         protected void addToBuildSpec(String builderID) throws CoreException {
 357
 358                 IProjectDescription description = getProject().getDescription();
 359                 ICommand javaCommand = getJavaCommand(description);
 360
 361                 if (javaCommand == null) {
 362
 363                         // Add a Java command to the build spec
 364                         ICommand command = description.newCommand();
 365                         command.setBuilderName(builderID);
 366                         setJavaCommand(description, command);
 367                 }
 368         }
 369
 370         protected void closing(Object info) throws JavaModelException {
 371
 372                 // forget source attachment recommendations
 373                 IPackageFragmentRoot[] roots = this.getPackageFragmentRoots();
 374 //              for (int i = 0; i < roots.length; i++) {
 375 //                      if (roots[i] instanceof JarPackageFragmentRoot){
 376 //                              ((JarPackageFragmentRoot) roots[i]).setSourceAttachmentProperty(null);
 377 //                      }
 378 //              }
 379
 380                 super.closing(info);
 381         }
 382
 383
 384
 385         /**
 386          * Internal computation of an expanded classpath. It will eliminate duplicates, and produce copies
 387          * of exported classpath entries to avoid possible side-effects ever after.
 388          */
 389         private void computeExpandedClasspath(
 390                 JavaProject initialProject,
 391                 boolean ignoreUnresolvedVariable,
 392                 boolean generateMarkerOnError,
 393                 HashSet visitedProjects,
 394                 ObjectVector accumulatedEntries) throws JavaModelException {
 395
 396                 if (visitedProjects.contains(this)){
 397                         return; // break cycles if any
 398                 }
 399                 visitedProjects.add(this);
 400
 401                 if (generateMarkerOnError && !this.equals(initialProject)){
 402                         generateMarkerOnError = false;
 403                 }
 404                 IClasspathEntry[] immediateClasspath =
 405                         getResolvedClasspath(ignoreUnresolvedVariable, generateMarkerOnError);
 406
 407                 IWorkspaceRoot workspaceRoot = ResourcesPlugin.getWorkspace().getRoot();
 408                 for (int i = 0, length = immediateClasspath.length; i < length; i++){
 409                         IClasspathEntry entry = immediateClasspath[i];
 410
 411                         boolean isInitialProject = this.equals(initialProject);
 412                         if (isInitialProject || entry.isExported()){
 413
 414                                 accumulatedEntries.add(entry);
 415
 416                                 // recurse in project to get all its indirect exports (only consider exported entries from there on)
 417                                 if (entry.getEntryKind() == ClasspathEntry.CPE_PROJECT) {
 418                                         IResource member = workspaceRoot.findMember(entry.getPath());
 419                                         if (member != null && member.getType() == IResource.PROJECT){ // double check if bound to project (23977)
 420                                                 IProject projRsc = (IProject) member;
 421                                                 if (JavaProject.hasJavaNature(projRsc)) {
 422                                                         JavaProject project = (JavaProject) PHPCore.create(projRsc);
 423                                                         project.computeExpandedClasspath(
 424                                                                 initialProject,
 425                                                                 ignoreUnresolvedVariable,
 426                                                                 generateMarkerOnError,
 427                                                                 visitedProjects,
 428                                                                 accumulatedEntries);
 429                                                 }
 430                                         }
 431                                 }
 432                         }
 433                 }
 434         }
 435
 436         /**
 437          * Returns (local/all) the package fragment roots identified by the given project's classpath.
 438          * Note: this follows project classpath references to find required project contributions,
 439          * eliminating duplicates silently.
 440          * Only works with resolved entries
 441          */
 442         public IPackageFragmentRoot[] computePackageFragmentRoots(IClasspathEntry[] resolvedClasspath, boolean retrieveExportedRoots) throws JavaModelException {
 443
 444                 ObjectVector accumulatedRoots = new ObjectVector();
 445                 computePackageFragmentRoots(
 446                         resolvedClasspath,
 447                         accumulatedRoots,
 448                         new HashSet(5), // rootIDs
 449                         true, // inside original project
 450                         true, // check existency
 451                         retrieveExportedRoots);
 452                 IPackageFragmentRoot[] rootArray = new IPackageFragmentRoot[accumulatedRoots.size()];
 453                 accumulatedRoots.copyInto(rootArray);
 454                 return rootArray;
 455         }
 456
 457         /**
 458          * Computes the package fragment roots identified by the given entry.
 459          * Only works with resolved entry
 460          */
 461         public IPackageFragmentRoot[] computePackageFragmentRoots(IClasspathEntry resolvedEntry) {
 462                 try {
 463                         return
 464                                 computePackageFragmentRoots(
 465                                         new IClasspathEntry[]{ resolvedEntry },
 466                                         false // don't retrieve exported roots
 467                                 );
 468                 } catch (JavaModelException e) {
 469                         return new IPackageFragmentRoot[] {};
 470                 }
 471         }
 472
 473         /**
 474          * Returns the package fragment roots identified by the given entry. In case it refers to
 475          * a project, it will follow its classpath so as to find exported roots as well.
 476          * Only works with resolved entry
 477          */
 478         public void computePackageFragmentRoots(
 479                 IClasspathEntry resolvedEntry,
 480                 ObjectVector accumulatedRoots,
 481                 HashSet rootIDs,
 482                 boolean insideOriginalProject,
 483                 boolean checkExistency,
 484                 boolean retrieveExportedRoots) throws JavaModelException {
 485
 486                 String rootID = ((ClasspathEntry)resolvedEntry).rootID();
 487                 if (rootIDs.contains(rootID)) return;
 488
 489                 IPath projectPath = getProject().getFullPath();
 490                 IPath entryPath = resolvedEntry.getPath();
 491                 IWorkspaceRoot workspaceRoot = ResourcesPlugin.getWorkspace().getRoot();
 492
 493                 switch(resolvedEntry.getEntryKind()){
 494
 495                         // source folder
 496                         case IClasspathEntry.CPE_SOURCE :
 497
 498                                 if (projectPath.isPrefixOf(entryPath)){
 499                                         if (checkExistency) {
 500                                                 Object target = JavaModel.getTarget(workspaceRoot, entryPath, checkExistency);
 501                                                 if (target == null) return;
 502
 503                                                 if (target instanceof IFolder || target instanceof IProject){
 504                                                         accumulatedRoots.add(
 505                                                                 getPackageFragmentRoot((IResource)target));
 506                                                         rootIDs.add(rootID);
 507                                                 }
 508                                         } else {
 509                                                 IPackageFragmentRoot root = getFolderPackageFragmentRoot(entryPath);
 510                                                 if (root != null) {
 511                                                         accumulatedRoots.add(root);
 512                                                         rootIDs.add(rootID);
 513                                                 }
 514                                         }
 515                                 }
 516                                 break;
 517
 518                         // internal/external JAR or folder
 519                         case IClasspathEntry.CPE_LIBRARY :
 520
 521                                 if (!insideOriginalProject && !resolvedEntry.isExported()) return;
 522
 523                                 if (checkExistency) {
 524                                         Object target = JavaModel.getTarget(workspaceRoot, entryPath, checkExistency);
 525                                         if (target == null) return;
 526
 527                                         if (target instanceof IResource){
 528                                                 // internal target
 529                                                 IResource resource = (IResource) target;
 530                                                 IPackageFragmentRoot root = getPackageFragmentRoot(resource);
 531                                                 if (root != null) {
 532                                                         accumulatedRoots.add(root);
 533                                                         rootIDs.add(rootID);
 534                                                 }
 535                                         } else {
 536                                                 // external target - only JARs allowed
 537 //                                              if (((java.io.File)target).isFile() && (Util.isArchiveFileName(entryPath.lastSegment()))) {
 538 //                                                      accumulatedRoots.add(
 539 //                                                              new JarPackageFragmentRoot(entryPath, this));
 540 //                                                      rootIDs.add(rootID);
 541 //                                              }
 542                                         }
 543                                 } else {
 544                                         IPackageFragmentRoot root = getPackageFragmentRoot(entryPath);
 545                                         if (root != null) {
 546                                                 accumulatedRoots.add(root);
 547                                                 rootIDs.add(rootID);
 548                                         }
 549                                 }
 550                                 break;
 551
 552                         // recurse into required project
 553                         case IClasspathEntry.CPE_PROJECT :
 554
 555                                 if (!retrieveExportedRoots) return;
 556                                 if (!insideOriginalProject && !resolvedEntry.isExported()) return;
 557
 558                                 IResource member = workspaceRoot.findMember(entryPath);
 559                                 if (member != null && member.getType() == IResource.PROJECT){// double check if bound to project (23977)
 560                                         IProject requiredProjectRsc = (IProject) member;
 561                                         if (JavaProject.hasJavaNature(requiredProjectRsc)){ // special builder binary output
 562                                                 rootIDs.add(rootID);
 563                                                 JavaProject requiredProject = (JavaProject)PHPCore.create(requiredProjectRsc);
 564                                                 requiredProject.computePackageFragmentRoots(
 565                                                         requiredProject.getResolvedClasspath(true),
 566                                                         accumulatedRoots,
 567                                                         rootIDs,
 568                                                         false,
 569                                                         checkExistency,
 570                                                         retrieveExportedRoots);
 571                                         }
 572                                 break;
 573                         }
 574                 }
 575         }
 576
 577         /**
 578          * Returns (local/all) the package fragment roots identified by the given project's classpath.
 579          * Note: this follows project classpath references to find required project contributions,
 580          * eliminating duplicates silently.
 581          * Only works with resolved entries
 582          */
 583         public void computePackageFragmentRoots(
 584                 IClasspathEntry[] resolvedClasspath,
 585                 ObjectVector accumulatedRoots,
 586                 HashSet rootIDs,
 587                 boolean insideOriginalProject,
 588                 boolean checkExistency,
 589                 boolean retrieveExportedRoots) throws JavaModelException {
 590
 591                 if (insideOriginalProject){
 592                         rootIDs.add(rootID());
 593                 }
 594                 for (int i = 0, length = resolvedClasspath.length; i < length; i++){
 595                         computePackageFragmentRoots(
 596                                 resolvedClasspath[i],
 597                                 accumulatedRoots,
 598                                 rootIDs,
 599                                 insideOriginalProject,
 600                                 checkExistency,
 601                                 retrieveExportedRoots);
 602                 }
 603         }
 604
 605         /**
 606          * Compute the file name to use for a given shared property
 607          */
 608         public String computeSharedPropertyFileName(QualifiedName qName) {
 609
 610                 return '.' + qName.getLocalName();
 611         }
 612
 613         /*
 614          * Returns whether the given resource is accessible through the children or the non-Java resources of this project.
 615          * Returns true if the resource is not in the project.
 616          * Assumes that the resource is a folder or a file.
 617          */
 618         public boolean contains(IResource resource) {
 619
 620                 IClasspathEntry[] classpath;
 621                 IPath output;
 622                 try {
 623                         classpath = getResolvedClasspath(true);
 624                         output = getOutputLocation();
 625                 } catch (JavaModelException e) {
 626                         return false;
 627                 }
 628
 629                 IPath fullPath = resource.getFullPath();
 630                 IPath innerMostOutput = output.isPrefixOf(fullPath) ? output : null;
 631                 IClasspathEntry innerMostEntry = null;
 632                 for (int j = 0, cpLength = classpath.length; j < cpLength; j++) {
 633                         IClasspathEntry entry = classpath[j];
 634
 635                         IPath entryPath = entry.getPath();
 636                         if ((innerMostEntry == null || innerMostEntry.getPath().isPrefixOf(entryPath))
 637                                         && entryPath.isPrefixOf(fullPath)) {
 638                                 innerMostEntry = entry;
 639                         }
 640                         IPath entryOutput = classpath[j].getOutputLocation();
 641                         if (entryOutput != null && entryOutput.isPrefixOf(fullPath)) {
 642                                 innerMostOutput = entryOutput;
 643                         }
 644                 }
 645                 if (innerMostEntry != null) {
 646                         // special case prj==src and nested output location
 647                         if (innerMostOutput != null && innerMostOutput.segmentCount() > 1 // output isn't project
 648                                         && innerMostEntry.getPath().segmentCount() == 1) { // 1 segment must be project name
 649                                 return false;
 650                         }
 651                         if  (resource instanceof IFolder) {
 652                                  // folders are always included in src/lib entries
 653                                  return true;
 654                         }
 655                         switch (innerMostEntry.getEntryKind()) {
 656                                 case IClasspathEntry.CPE_SOURCE:
 657                                         // .class files are not visible in source folders
 658                                         return true; //!Util.isClassFileName(fullPath.lastSegment());
 659                                 case IClasspathEntry.CPE_LIBRARY:
 660                                         // .java files are not visible in library folders
 661                                         return !Util.isJavaFileName(fullPath.lastSegment());
 662                         }
 663                 }
 664                 if (innerMostOutput != null) {
 665                         return false;
 666                 }
 667                 return true;
 668         }
 669
 670         /**
 671          * Record a new marker denoting a classpath problem
 672          */
 673         IMarker createClasspathProblemMarker(IJavaModelStatus status) {
 674
 675                 IMarker marker = null;
 676                 int severity;
 677                 String[] arguments = new String[0];
 678                 boolean isCycleProblem = false, isClasspathFileFormatProblem = false;
 679                 switch (status.getCode()) {
 680
 681                         case  IJavaModelStatusConstants.CLASSPATH_CYCLE :
 682                                 isCycleProblem = true;
 683                                 if (PHPCore.ERROR.equals(getOption(PHPCore.CORE_CIRCULAR_CLASSPATH, true))) {
 684                                         severity = IMarker.SEVERITY_ERROR;
 685                                 } else {
 686                                         severity = IMarker.SEVERITY_WARNING;
 687                                 }
 688                                 break;
 689
 690                         case  IJavaModelStatusConstants.INVALID_CLASSPATH_FILE_FORMAT :
 691                                 isClasspathFileFormatProblem = true;
 692                                 severity = IMarker.SEVERITY_ERROR;
 693                                 break;
 694
 695                         default:
 696                                 IPath path = status.getPath();
 697                                 if (path != null) arguments = new String[] { path.toString() };
 698                                 if (PHPCore.ERROR.equals(getOption(PHPCore.CORE_INCOMPLETE_CLASSPATH, true))) {
 699                                         severity = IMarker.SEVERITY_ERROR;
 700                                 } else {
 701                                         severity = IMarker.SEVERITY_WARNING;
 702                                 }
 703                                 break;
 704                 }
 705
 706                 try {
 707                         marker = getProject().createMarker(IJavaModelMarker.BUILDPATH_PROBLEM_MARKER);
 708                         marker.setAttributes(
 709                                 new String[] {
 710                                         IMarker.MESSAGE,
 711                                         IMarker.SEVERITY,
 712                                         IMarker.LOCATION,
 713                                         IJavaModelMarker.CYCLE_DETECTED,
 714                                         IJavaModelMarker.CLASSPATH_FILE_FORMAT,
 715                                         IJavaModelMarker.ID,
 716                                         IJavaModelMarker.ARGUMENTS ,
 717                                 },
 718                                 new Object[] {
 719                                         status.getMessage(),
 720                                         new Integer(severity),
 721                                         Util.bind("classpath.buildPath"),//$NON-NLS-1$
 722                                         isCycleProblem ? "true" : "false",//$NON-NLS-1$ //$NON-NLS-2$
 723                                         isClasspathFileFormatProblem ? "true" : "false",//$NON-NLS-1$ //$NON-NLS-2$
 724                                         new Integer(status.getCode()),
 725                                         Util.getProblemArgumentsForMarker(arguments) ,
 726                                 }
 727                         );
 728                 } catch (CoreException e) {
 729                 }
 730                 return marker;
 731         }
 732
 733         /**
 734          * Returns a new element info for this element.
 735          */
 736         protected OpenableElementInfo createElementInfo() {
 737
 738                 return new JavaProjectElementInfo();
 739         }
 740
 741         /**
 742          * Reads and decode an XML classpath string
 743          */
 744         protected IClasspathEntry[] decodeClasspath(String xmlClasspath, boolean createMarker, boolean logProblems) {
 745
 746                 ArrayList paths = new ArrayList();
 747                 IClasspathEntry defaultOutput = null;
 748                 try {
 749                         if (xmlClasspath == null) return null;
 750                         StringReader reader = new StringReader(xmlClasspath);
 751                         Element cpElement;
 752
 753                         try {
 754                                 DocumentBuilder parser =
 755                                         DocumentBuilderFactory.newInstance().newDocumentBuilder();
 756                                 cpElement = parser.parse(new InputSource(reader)).getDocumentElement();
 757                         } catch (SAXException e) {
 758                                 throw new IOException(Util.bind("file.badFormat")); //$NON-NLS-1$
 759                         } catch (ParserConfigurationException e) {
 760                                 throw new IOException(Util.bind("file.badFormat")); //$NON-NLS-1$
 761                         } finally {
 762                                 reader.close();
 763                         }
 764
 765                         if (!cpElement.getNodeName().equalsIgnoreCase("classpath")) { //$NON-NLS-1$
 766                                 throw new IOException(Util.bind("file.badFormat")); //$NON-NLS-1$
 767                         }
 768                         NodeList list = cpElement.getElementsByTagName("classpathentry"); //$NON-NLS-1$
 769                         int length = list.getLength();
 770
 771                         for (int i = 0; i < length; ++i) {
 772                                 Node node = list.item(i);
 773                                 if (node.getNodeType() == Node.ELEMENT_NODE) {
 774                                         IClasspathEntry entry = ClasspathEntry.elementDecode((Element)node, this);
 775                                         if (entry != null){
 776                                                 if (entry.getContentKind() == ClasspathEntry.K_OUTPUT) {
 777                                                         defaultOutput = entry; // separate output
 778                                                 } else {
 779                                                         paths.add(entry);
 780                                 }
 781                         }
 782                                 }
 783                         }
 784                 } catch (IOException e) {
 785                         // bad format
 786                         if (createMarker && this.getProject().isAccessible()) {
 787                                         this.createClasspathProblemMarker(new JavaModelStatus(
 788                                                         IJavaModelStatusConstants.INVALID_CLASSPATH_FILE_FORMAT,
 789                                                         Util.bind("classpath.xmlFormatError", this.getElementName(), e.getMessage()))); //$NON-NLS-1$
 790                         }
 791                         if (logProblems) {
 792                                 Util.log(e,
 793                                         "Exception while retrieving "+ this.getPath() //$NON-NLS-1$
 794                                         +"/.classpath, will mark classpath as invalid"); //$NON-NLS-1$
 795                         }
 796                         return INVALID_CLASSPATH;
 797                 } catch (Assert.AssertionFailedException e) {
 798                         // failed creating CP entries from file
 799                         if (createMarker && this.getProject().isAccessible()) {
 800                                 this.createClasspathProblemMarker(new JavaModelStatus(
 801                                                 IJavaModelStatusConstants.INVALID_CLASSPATH_FILE_FORMAT,
 802                                                 Util.bind("classpath.illegalEntryInClasspathFile", this.getElementName(), e.getMessage()))); //$NON-NLS-1$
 803                         }
 804                         if (logProblems) {
 805                                 Util.log(e,
 806                                         "Exception while retrieving "+ this.getPath() //$NON-NLS-1$
 807                                         +"/.classpath, will mark classpath as invalid"); //$NON-NLS-1$
 808                         }
 809                         return INVALID_CLASSPATH;
 810                 }
 811                 int pathSize = paths.size();
 812                 if (pathSize > 0 || defaultOutput != null) {
 813                         IClasspathEntry[] entries = new IClasspathEntry[pathSize + (defaultOutput == null ? 0 : 1)];
 814                         paths.toArray(entries);
 815                         if (defaultOutput != null) entries[pathSize] = defaultOutput; // ensure output is last item
 816                         return entries;
 817                 } else {
 818                         return null;
 819                 }
 820         }
 821
 822         /**
 823         /**
 824          * Removes the Java nature from the project.
 825          */
 826         public void deconfigure() throws CoreException {
 827
 828                 // deregister Java builder
 829                 removeFromBuildSpec(PHPeclipsePlugin.BUILDER_PARSER_ID);
 830         }
 831
 832         /**
 833          * Returns a default class path.
 834          * This is the root of the project
 835          */
 836         protected IClasspathEntry[] defaultClasspath() throws JavaModelException {
 837
 838                 return new IClasspathEntry[] {
 839                          PHPCore.newSourceEntry(getProject().getFullPath())};
 840         }
 841
 842         /**
 843          * Returns a default output location.
 844          * This is the project bin folder
 845          */
 846         protected IPath defaultOutputLocation() throws JavaModelException {
 847                 return getProject().getFullPath().append("bin"); //$NON-NLS-1$
 848         }
 849
 850         /**
 851          * Returns the XML String encoding of the class path.
 852          */
 853         protected String encodeClasspath(IClasspathEntry[] classpath, IPath outputLocation, boolean useLineSeparator) throws JavaModelException {
 854
 855                 Document document = new DocumentImpl();
 856                 Element cpElement = document.createElement("classpath"); //$NON-NLS-1$
 857                 document.appendChild(cpElement);
 858
 859                 for (int i = 0; i < classpath.length; ++i) {
 860                         cpElement.appendChild(((ClasspathEntry)classpath[i]).elementEncode(document, getProject().getFullPath()));
 861                 }
 862
 863                 if (outputLocation != null) {
 864                         outputLocation = outputLocation.removeFirstSegments(1);
 865                         outputLocation = outputLocation.makeRelative();
 866                         Element oElement = document.createElement("classpathentry"); //$NON-NLS-1$
 867                         oElement.setAttribute("kind", ClasspathEntry.kindToString(ClasspathEntry.K_OUTPUT));    //$NON-NLS-1$
 868                         oElement.setAttribute("path", outputLocation.toString()); //$NON-NLS-1$
 869                         cpElement.appendChild(oElement);
 870                 }
 871
 872                 // produce a String output
 873                 try {
 874                         ByteArrayOutputStream s = new ByteArrayOutputStream();
 875                         OutputFormat format = new OutputFormat();
 876                         if (useLineSeparator) {
 877                                 format.setIndenting(true);
 878                                 format.setLineSeparator(System.getProperty("line.separator"));  //$NON-NLS-1$
 879                         } else {
 880                                 format.setPreserveSpace(true);
 881                         }
 882                         Serializer serializer =
 883                                 SerializerFactory.getSerializerFactory(Method.XML).makeSerializer(
 884                                         new OutputStreamWriter(s, "UTF8"), //$NON-NLS-1$
 885                                         format);
 886                         serializer.asDOMSerializer().serialize(document);
 887                         return s.toString("UTF8"); //$NON-NLS-1$
 888                 } catch (IOException e) {
 889                         throw new JavaModelException(e, IJavaModelStatusConstants.IO_EXCEPTION);
 890                 }
 891         }
 892
 893         /**
 894          * Returns true if this handle represents the same Java project
 895          * as the given handle. Two handles represent the same
 896          * project if they are identical or if they represent a project with
 897          * the same underlying resource and occurrence counts.
 898          *
 899          * @see JavaElement#equals
 900          */
 901         public boolean equals(Object o) {
 902
 903                 if (this == o)
 904                         return true;
 905
 906                 if (!(o instanceof JavaProject))
 907                         return false;
 908
 909                 JavaProject other = (JavaProject) o;
 910                 return getProject().equals(other.getProject())
 911                         && fOccurrenceCount == other.fOccurrenceCount;
 912         }
 913
 914         public boolean exists() {
 915                 if (!hasJavaNature(fProject)) return false;
 916                 return super.exists();
 917         }
 918
 919         /**
 920          * @see IJavaProject
 921          */
 922         public IJavaElement findElement(IPath path) throws JavaModelException {
 923
 924                 if (path == null || path.isAbsolute()) {
 925                         throw new JavaModelException(
 926                                 new JavaModelStatus(IJavaModelStatusConstants.INVALID_PATH, path));
 927                 }
 928 //              try {
 929
 930                         String extension = path.getFileExtension();
 931                         if (extension == null) {
 932                                 String packageName = path.toString().replace(IPath.SEPARATOR, '.');
 933
 934 //                              IPackageFragment[] pkgFragments =
 935 //                                      getNameLookup().findPackageFragments(packageName, false);
 936 //                              if (pkgFragments == null) {
 937                                         return null;
 938
 939 //                              } else {
 940 //                                      // try to return one that is a child of this project
 941 //                                      for (int i = 0, length = pkgFragments.length; i < length; i++) {
 942 //
 943 //                                              IPackageFragment pkgFragment = pkgFragments[i];
 944 //                                              if (this.equals(pkgFragment.getParent().getParent())) {
 945 //                                                      return pkgFragment;
 946 //                                              }
 947 //                                      }
 948 //                                      // default to the first one
 949 //                                      return pkgFragments[0];
 950 //                              }
 951                         } else if (
 952                                 extension.equalsIgnoreCase("java") //$NON-NLS-1$
 953                                         || extension.equalsIgnoreCase("class")) {  //$NON-NLS-1$
 954                                 IPath packagePath = path.removeLastSegments(1);
 955                                 String packageName = packagePath.toString().replace(IPath.SEPARATOR, '.');
 956                                 String typeName = path.lastSegment();
 957                                 typeName = typeName.substring(0, typeName.length() - extension.length() - 1);
 958                                 String qualifiedName = null;
 959                                 if (packageName.length() > 0) {
 960                                         qualifiedName = packageName + "." + typeName; //$NON-NLS-1$
 961                                 } else {
 962                                         qualifiedName = typeName;
 963                                 }
 964 //                              IType type =
 965 //                                      getNameLookup().findType(
 966 //                                              qualifiedName,
 967 //                                              false,
 968 //                                              NameLookup.ACCEPT_CLASSES | NameLookup.ACCEPT_INTERFACES);
 969 //                              if (type != null) {
 970 //                                      return type.getParent();
 971 //                              } else {
 972                                         return null;
 973 //                              }
 974                         } else {
 975                                 // unsupported extension
 976                                 return null;
 977                         }
 978 //              } catch (JavaModelException e) {
 979 //                      if (e.getStatus().getCode()
 980 //                              == IJavaModelStatusConstants.ELEMENT_DOES_NOT_EXIST) {
 981 //                              return null;
 982 //                      } else {
 983 //                              throw e;
 984 //                      }
 985 //              }
 986         }
 987
 988         /**
 989          * @see IJavaProject
 990          */
 991 //      public IPackageFragment findPackageFragment(IPath path)
 992 //              throws JavaModelException {
 993 //
 994 //              return findPackageFragment0(JavaProject.canonicalizedPath(path));
 995 //      }
 996 //
 997 //      /**
 998 //       * non path canonicalizing version
 999 //       */
1000 //      public IPackageFragment findPackageFragment0(IPath path)
1001 //              throws JavaModelException {
1002 //
1003 //              return getNameLookup().findPackageFragment(path);
1004 //      }
1005
1006         /**
1007          * @see IJavaProject
1008          */
1009         public IPackageFragmentRoot findPackageFragmentRoot(IPath path)
1010                 throws JavaModelException {
1011
1012                 return findPackageFragmentRoot0(JavaProject.canonicalizedPath(path));
1013         }
1014
1015         /**
1016          * no path canonicalization
1017          */
1018         public IPackageFragmentRoot findPackageFragmentRoot0(IPath path)
1019                 throws JavaModelException {
1020
1021                 IPackageFragmentRoot[] allRoots = this.getAllPackageFragmentRoots();
1022                 if (!path.isAbsolute()) {
1023                         throw new IllegalArgumentException(Util.bind("path.mustBeAbsolute")); //$NON-NLS-1$
1024                 }
1025                 for (int i= 0; i < allRoots.length; i++) {
1026                         IPackageFragmentRoot classpathRoot= allRoots[i];
1027                         if (classpathRoot.getPath().equals(path)) {
1028                                 return classpathRoot;
1029                         }
1030                 }
1031                 return null;
1032         }
1033         /**
1034          * @see IJavaProject
1035          */
1036         public IPackageFragmentRoot[] findPackageFragmentRoots(IClasspathEntry entry) {
1037                 try {
1038                         IClasspathEntry[] classpath = this.getRawClasspath();
1039                         for (int i = 0, length = classpath.length; i < length; i++) {
1040                                 if (classpath[i].equals(entry)) { // entry may need to be resolved
1041                                         return
1042                                                 computePackageFragmentRoots(
1043                                                         getResolvedClasspath(new IClasspathEntry[] {entry}, null, true, false, null/*no reverse map*/),
1044                                                         false); // don't retrieve exported roots
1045                                 }
1046                         }
1047                 } catch (JavaModelException e) {
1048                 }
1049                 return new IPackageFragmentRoot[] {};
1050         }
1051
1052         /**
1053          * @see IJavaProject#findType(String)
1054          */
1055 //      public IType findType(String fullyQualifiedName) throws JavaModelException {
1056 //              IType type =
1057 //                      this.getNameLookup().findType(
1058 //                              fullyQualifiedName,
1059 //                              false,
1060 //                              NameLookup.ACCEPT_CLASSES | NameLookup.ACCEPT_INTERFACES);
1061 //              if (type == null) {
1062 //                      // try to find enclosing type
1063 //                      int lastDot = fullyQualifiedName.lastIndexOf('.');
1064 //                      if (lastDot == -1) return null;
1065 //                      type = this.findType(fullyQualifiedName.substring(0, lastDot));
1066 //                      if (type != null) {
1067 //                              type = type.getType(fullyQualifiedName.substring(lastDot+1));
1068 //                              if (!type.exists()) {
1069 //                                      return null;
1070 //                              }
1071 //                      }
1072 //              }
1073 //              return type;
1074 //      }
1075
1076         /**
1077          * @see IJavaProject#findType(String, String)
1078          */
1079 //      public IType findType(String packageName, String typeQualifiedName) throws JavaModelException {
1080 //              return
1081 //                      this.getNameLookup().findType(
1082 //                              typeQualifiedName,
1083 //                              packageName,
1084 //                              false,
1085 //                              NameLookup.ACCEPT_CLASSES | NameLookup.ACCEPT_INTERFACES);
1086 //      }
1087 //
1088         /**
1089          * Remove all markers denoting classpath problems
1090          */
1091         protected void flushClasspathProblemMarkers(boolean flushCycleMarkers, boolean flushClasspathFormatMarkers) {
1092                 try {
1093                         IProject project = getProject();
1094                         if (project.exists()) {
1095                                 IMarker[] markers = project.findMarkers(IJavaModelMarker.BUILDPATH_PROBLEM_MARKER, false, IResource.DEPTH_ZERO);
1096                                 for (int i = 0, length = markers.length; i < length; i++) {
1097                                         IMarker marker = markers[i];
1098                                         if (flushCycleMarkers && flushClasspathFormatMarkers) {
1099                                                 marker.delete();
1100                                         } else {
1101                                                 String cycleAttr = (String)marker.getAttribute(IJavaModelMarker.CYCLE_DETECTED);
1102                                                 String classpathFileFormatAttr =  (String)marker.getAttribute(IJavaModelMarker.CLASSPATH_FILE_FORMAT);
1103                                                 if ((flushCycleMarkers == (cycleAttr != null && cycleAttr.equals("true"))) //$NON-NLS-1$
1104                                                         && (flushClasspathFormatMarkers == (classpathFileFormatAttr != null && classpathFileFormatAttr.equals("true")))){ //$NON-NLS-1$
1105                                                         marker.delete();
1106                                                 }
1107                                         }
1108                                 }
1109                         }
1110                 } catch (CoreException e) {
1111                 }
1112         }
1113
1114         /**
1115          * @see Openable
1116          */
1117         protected boolean generateInfos(
1118                 OpenableElementInfo info,
1119                 IProgressMonitor pm,
1120                 Map newElements,
1121                 IResource underlyingResource) throws JavaModelException {
1122
1123                 boolean validInfo = false;
1124                 try {
1125                         if (getProject().isOpen()) {
1126                                 // put the info now, because computing the roots requires it
1127                                 JavaModelManager.getJavaModelManager().putInfo(this, info);
1128
1129                                 // compute the pkg fragment roots
1130                                 updatePackageFragmentRoots();
1131
1132                                 // remember the timestamps of external libraries the first time they are looked up
1133                                 IClasspathEntry[] resolvedClasspath = getResolvedClasspath(true/*ignore unresolved variable*/);
1134                                 for (int i = 0, length = resolvedClasspath.length; i < length; i++) {
1135                                         IClasspathEntry entry = resolvedClasspath[i];
1136                                         if (entry.getEntryKind() == IClasspathEntry.CPE_LIBRARY) {
1137                                                 IPath path = entry.getPath();
1138                                                 Object target = JavaModel.getTarget(ResourcesPlugin.getWorkspace().getRoot(), path, true);
1139                                                 if (target instanceof java.io.File) {
1140                                                         Map externalTimeStamps = JavaModelManager.getJavaModelManager().deltaProcessor.externalTimeStamps;
1141                                                         if (externalTimeStamps.get(path) == null) {
1142                                                                 long timestamp = DeltaProcessor.getTimeStamp((java.io.File)target);
1143                                                                 externalTimeStamps.put(path, new Long(timestamp));
1144                                                         }
1145                                                 }
1146                                         }
1147                                 }
1148
1149                                 // only valid if reaches here
1150                                 validInfo = true;
1151                         }
1152                 } finally {
1153                         if (!validInfo)
1154                                 JavaModelManager.getJavaModelManager().removeInfo(this);
1155                 }
1156                 return validInfo;
1157         }
1158
1159         /**
1160          * @see IJavaProject
1161          */
1162         public IPackageFragmentRoot[] getAllPackageFragmentRoots()
1163                 throws JavaModelException {
1164
1165                 return computePackageFragmentRoots(getResolvedClasspath(true), true);
1166         }
1167
1168         /**
1169          * Returns the classpath entry that refers to the given path
1170          * or <code>null</code> if there is no reference to the path.
1171          */
1172         public IClasspathEntry getClasspathEntryFor(IPath path)
1173                 throws JavaModelException {
1174
1175                 IClasspathEntry[] entries = getExpandedClasspath(true);
1176                 for (int i = 0; i < entries.length; i++) {
1177                         if (entries[i].getPath().equals(path)) {
1178                                 return entries[i];
1179                         }
1180                 }
1181                 return null;
1182         }
1183
1184         /*
1185          * Returns the cycle marker associated with this project or null if none.
1186          */
1187         public IMarker getCycleMarker(){
1188                 try {
1189                         IProject project = getProject();
1190                         if (project.exists()) {
1191                                 IMarker[] markers = project.findMarkers(IJavaModelMarker.BUILDPATH_PROBLEM_MARKER, false, IResource.DEPTH_ZERO);
1192                                 for (int i = 0, length = markers.length; i < length; i++) {
1193                                         IMarker marker = markers[i];
1194                                         String cycleAttr = (String)marker.getAttribute(IJavaModelMarker.CYCLE_DETECTED);
1195                                         if (cycleAttr != null && cycleAttr.equals("true")){ //$NON-NLS-1$
1196                                                 return marker;
1197                                         }
1198                                 }
1199                         }
1200                 } catch (CoreException e) {
1201                 }
1202                 return null;
1203         }
1204
1205         /**
1206          * This is a helper method returning the expanded classpath for the project, as a list of classpath entries,
1207          * where all classpath variable entries have been resolved and substituted with their final target entries.
1208          * All project exports have been appended to project entries.
1209          */
1210         public IClasspathEntry[] getExpandedClasspath(boolean ignoreUnresolvedVariable) throws JavaModelException {
1211
1212                         return getExpandedClasspath(ignoreUnresolvedVariable, false);
1213         }
1214
1215         /**
1216          * Internal variant which can create marker on project for invalid entries,
1217          * it will also perform classpath expansion in presence of project prerequisites
1218          * exporting their entries.
1219          */
1220         public IClasspathEntry[] getExpandedClasspath(
1221                 boolean ignoreUnresolvedVariable,
1222                 boolean generateMarkerOnError) throws JavaModelException {
1223
1224                 ObjectVector accumulatedEntries = new ObjectVector();
1225                 computeExpandedClasspath(this, ignoreUnresolvedVariable, generateMarkerOnError, new HashSet(5), accumulatedEntries);
1226
1227                 IClasspathEntry[] expandedPath = new IClasspathEntry[accumulatedEntries.size()];
1228                 accumulatedEntries.copyInto(expandedPath);
1229
1230                 return expandedPath;
1231         }
1232
1233         /**
1234          * Returns the <code>char</code> that marks the start of this handles
1235          * contribution to a memento.
1236          */
1237         protected char getHandleMementoDelimiter() {
1238
1239                 return JEM_JAVAPROJECT;
1240         }
1241
1242         /**
1243          * Find the specific Java command amongst the build spec of a given description
1244          */
1245         private ICommand getJavaCommand(IProjectDescription description)
1246                 throws CoreException {
1247
1248                 ICommand[] commands = description.getBuildSpec();
1249                 for (int i = 0; i < commands.length; ++i) {
1250                         if (commands[i].getBuilderName().equals(PHPeclipsePlugin.BUILDER_PARSER_ID)) {
1251                                 return commands[i];
1252                         }
1253                 }
1254                 return null;
1255         }
1256
1257         /**
1258          * Convenience method that returns the specific type of info for a Java project.
1259          */
1260         protected JavaProjectElementInfo getJavaProjectElementInfo()
1261                 throws JavaModelException {
1262
1263                 return (JavaProjectElementInfo) getElementInfo();
1264         }
1265
1266         /**
1267          * @see IJavaProject
1268          */
1269         public NameLookup getNameLookup() throws JavaModelException {
1270
1271                 JavaProjectElementInfo info = getJavaProjectElementInfo();
1272                 // lock on the project info to avoid race condition
1273                 synchronized(info){
1274                         NameLookup nameLookup;
1275                         if ((nameLookup = info.getNameLookup()) == null){
1276                                 info.setNameLookup(nameLookup = new NameLookup(this));
1277                         }
1278                         return nameLookup;
1279                 }
1280         }
1281 //
1282 //      /**
1283 //       * Returns an array of non-java resources contained in the receiver.
1284 //       */
1285 //      public Object[] getNonJavaResources() throws JavaModelException {
1286 //
1287 //              return ((JavaProjectElementInfo) getElementInfo()).getNonJavaResources(this);
1288 //      }
1289
1290         /**
1291          * @see org.eclipse.jdt.core.IJavaProject#getOption(String, boolean)
1292          */
1293         public String getOption(String optionName, boolean inheritJavaCoreOptions) {
1294
1295                 if (JavaModelManager.OptionNames.contains(optionName)){
1296
1297                         Preferences preferences = getPreferences();
1298                         if (preferences == null || preferences.isDefault(optionName)) {
1299                                 return inheritJavaCoreOptions ? PHPCore.getOption(optionName) : null;
1300                         }
1301                         return preferences.getString(optionName).trim();
1302                 }
1303                 return null;
1304         }
1305
1306         /**
1307          * @see org.eclipse.jdt.core.IJavaProject#getOptions(boolean)
1308          */
1309         public Map getOptions(boolean inheritJavaCoreOptions) {
1310
1311                 // initialize to the defaults from JavaCore options pool
1312                 Map options = inheritJavaCoreOptions ? PHPCore.getOptions() : new Hashtable(5);
1313
1314                 Preferences preferences = getPreferences();
1315                 if (preferences == null) return options; // cannot do better (non-Java project)
1316                 HashSet optionNames = JavaModelManager.OptionNames;
1317
1318                 // get preferences set to their default
1319                 if (inheritJavaCoreOptions){
1320                         String[] defaultPropertyNames = preferences.defaultPropertyNames();
1321                         for (int i = 0; i < defaultPropertyNames.length; i++){
1322                                 String propertyName = defaultPropertyNames[i];
1323                                 if (optionNames.contains(propertyName)){
1324                                         options.put(propertyName, preferences.getDefaultString(propertyName).trim());
1325                                 }
1326                         }
1327                 }
1328                 // get custom preferences not set to their default
1329                 String[] propertyNames = preferences.propertyNames();
1330                 for (int i = 0; i < propertyNames.length; i++){
1331                         String propertyName = propertyNames[i];
1332                         if (optionNames.contains(propertyName)){
1333                                 options.put(propertyName, preferences.getString(propertyName).trim());
1334                         }
1335                 }
1336                 return options;
1337         }
1338
1339         /**
1340          * @see IJavaProject
1341          */
1342         public IPath getOutputLocation() throws JavaModelException {
1343
1344                 JavaModelManager.PerProjectInfo perProjectInfo = JavaModelManager.getJavaModelManager().getPerProjectInfoCheckExistence(fProject);
1345                 IPath outputLocation = perProjectInfo.outputLocation;
1346                 if (outputLocation != null) return outputLocation;
1347
1348                 // force to read classpath - will position output location as well
1349                 this.getRawClasspath();
1350                 outputLocation = perProjectInfo.outputLocation;
1351                 if (outputLocation == null) {
1352                         return defaultOutputLocation();
1353                 }
1354                 return outputLocation;
1355         }
1356
1357         /**
1358          * @return A handle to the package fragment root identified by the given path.
1359          * This method is handle-only and the element may or may not exist. Returns
1360          * <code>null</code> if unable to generate a handle from the path (for example,
1361          * an absolute path that has less than 1 segment. The path may be relative or
1362          * absolute.
1363          */
1364         public IPackageFragmentRoot getPackageFragmentRoot(IPath path) {
1365                 if (!path.isAbsolute()) {
1366                         path = getPath().append(path);
1367                 }
1368                 int segmentCount = path.segmentCount();
1369                 switch (segmentCount) {
1370                         case 0:
1371                                 return null;
1372                         case 1:
1373                                 // default root
1374                                 return getPackageFragmentRoot(getProject());
1375                         default:
1376                                 // a path ending with .jar/.zip is still ambiguous and could still resolve to a source/lib folder
1377                                 // thus will try to guess based on existing resource
1378 //                              if (Util.isArchiveFileName(path.lastSegment())) {
1379 //                                      IResource resource = getProject().getWorkspace().getRoot().findMember(path);
1380 //                                      if (resource != null && resource.getType() == IResource.FOLDER){
1381 //                                              return getPackageFragmentRoot(resource);
1382 //                                      }
1383 //                                      return getPackageFragmentRoot0(path);
1384 //                              } else {
1385                                         return getPackageFragmentRoot(getProject().getWorkspace().getRoot().getFolder(path));
1386 //                              }
1387                 }
1388         }
1389
1390         /**
1391          * The path is known to match a source/library folder entry.
1392          */
1393         public IPackageFragmentRoot getFolderPackageFragmentRoot(IPath path) {
1394                 if (path.segmentCount() == 1) { // default project root
1395                         return getPackageFragmentRoot(getProject());
1396                 }
1397                 return getPackageFragmentRoot(getProject().getWorkspace().getRoot().getFolder(path));
1398         }
1399
1400         /**
1401          * @see IJavaProject
1402          */
1403         public IPackageFragmentRoot getPackageFragmentRoot(IResource resource) {
1404
1405                 switch (resource.getType()) {
1406                         case IResource.FILE:
1407 //                              if (Util.isArchiveFileName(resource.getName())) {
1408 //                                      return new JarPackageFragmentRoot(resource, this);
1409 //                              } else {
1410                                         return null;
1411 //                              }
1412                         case IResource.FOLDER:
1413                                 return new PackageFragmentRoot(resource, this, resource.getName());
1414                         case IResource.PROJECT:
1415                                 return new PackageFragmentRoot(resource, this, ""); //$NON-NLS-1$
1416                         default:
1417                                 return null;
1418                 }
1419         }
1420
1421         /**
1422          * @see IJavaProject
1423          */
1424 //      public IPackageFragmentRoot getPackageFragmentRoot(String jarPath) {
1425 //
1426 //              return getPackageFragmentRoot0(JavaProject.canonicalizedPath(new Path(jarPath)));
1427 //      }
1428 //
1429 //      /**
1430 //       * no path canonicalization
1431 //       */
1432 //      public IPackageFragmentRoot getPackageFragmentRoot0(IPath jarPath) {
1433 //
1434 //              return new JarPackageFragmentRoot(jarPath, this);
1435 //      }
1436
1437         /**
1438          * @see IJavaProject
1439          */
1440         public IPackageFragmentRoot[] getPackageFragmentRoots()
1441                 throws JavaModelException {
1442
1443                 Object[] children;
1444                 int length;
1445                 IPackageFragmentRoot[] roots;
1446
1447                 System.arraycopy(
1448                         children = getChildren(),
1449                         0,
1450                         roots = new IPackageFragmentRoot[length = children.length],
1451                         0,
1452                         length);
1453
1454                 return roots;
1455         }
1456
1457         /**
1458          * @see IJavaProject
1459          * @deprecated
1460          */
1461         public IPackageFragmentRoot[] getPackageFragmentRoots(IClasspathEntry entry) {
1462                 return findPackageFragmentRoots(entry);
1463         }
1464
1465         /**
1466          * Returns the package fragment root prefixed by the given path, or
1467          * an empty collection if there are no such elements in the model.
1468          */
1469         protected IPackageFragmentRoot[] getPackageFragmentRoots(IPath path)
1470
1471                 throws JavaModelException {
1472                 IPackageFragmentRoot[] roots = getAllPackageFragmentRoots();
1473                 ArrayList matches = new ArrayList();
1474
1475                 for (int i = 0; i < roots.length; ++i) {
1476                         if (path.isPrefixOf(roots[i].getPath())) {
1477                                 matches.add(roots[i]);
1478                         }
1479                 }
1480                 IPackageFragmentRoot[] copy = new IPackageFragmentRoot[matches.size()];
1481                 matches.toArray(copy);
1482                 return copy;
1483         }
1484
1485         /**
1486          * @see IJavaProject
1487          */
1488         public IPackageFragment[] getPackageFragments() throws JavaModelException {
1489
1490                 IPackageFragmentRoot[] roots = getPackageFragmentRoots();
1491                 return getPackageFragmentsInRoots(roots);
1492         }
1493
1494         /**
1495          * Returns all the package fragments found in the specified
1496          * package fragment roots.
1497          */
1498         public IPackageFragment[] getPackageFragmentsInRoots(IPackageFragmentRoot[] roots) {
1499
1500                 ArrayList frags = new ArrayList();
1501                 for (int i = 0; i < roots.length; i++) {
1502                         IPackageFragmentRoot root = roots[i];
1503                         try {
1504                                 IJavaElement[] rootFragments = root.getChildren();
1505                                 for (int j = 0; j < rootFragments.length; j++) {
1506                                         frags.add(rootFragments[j]);
1507                                 }
1508                         } catch (JavaModelException e) {
1509                                 // do nothing
1510                         }
1511                 }
1512                 IPackageFragment[] fragments = new IPackageFragment[frags.size()];
1513                 frags.toArray(fragments);
1514                 return fragments;
1515         }
1516
1517         /*
1518          * @see IJavaElement
1519          */
1520         public IPath getPath() {
1521                 return this.getProject().getFullPath();
1522         }
1523
1524         /**
1525          * @see IJavaProject
1526          */
1527         public IProject getProject() {
1528
1529                 return fProject;
1530         }
1531
1532         protected IProject getProject(String name) {
1533                 return PHPeclipsePlugin.getWorkspace().getRoot().getProject(name);
1534         }
1535
1536         public List getReferencedProjects() {
1537                         List referencedProjects = new ArrayList();
1538
1539                         Iterator iterator = getLoadPathEntries().iterator();
1540                         while (iterator.hasNext()) {
1541                                 LoadPathEntry pathEntry = (LoadPathEntry) iterator.next();
1542                                 if (pathEntry.getType() == LoadPathEntry.TYPE_PROJECT)
1543                                         referencedProjects.add(pathEntry.getProject());
1544                         }
1545
1546                         return referencedProjects;
1547                 }
1548
1549         /**
1550          * Returns the project custom preference pool.
1551          * Project preferences may include custom encoding.
1552          */
1553         public Preferences getPreferences(){
1554                 IProject project = getProject();
1555                 if (!JavaProject.hasJavaNature(project)) return null;
1556                 JavaModelManager.PerProjectInfo perProjectInfo = JavaModelManager.getJavaModelManager().getPerProjectInfo(project, true);
1557                 Preferences preferences =  perProjectInfo.preferences;
1558                 if (preferences != null) return preferences;
1559                 preferences = loadPreferences();
1560                 if (preferences == null) preferences = new Preferences();
1561                 perProjectInfo.preferences = preferences;
1562                 return preferences;
1563         }
1564
1565         /**
1566          * @see IJavaProject
1567          */
1568         public IClasspathEntry[] getRawClasspath() throws JavaModelException {
1569
1570                 JavaModelManager.PerProjectInfo perProjectInfo = JavaModelManager.getJavaModelManager().getPerProjectInfoCheckExistence(fProject);
1571                 IClasspathEntry[] classpath = perProjectInfo.classpath;
1572                 if (classpath != null) return classpath;
1573                 classpath = this.readClasspathFile(false/*don't create markers*/, true/*log problems*/);
1574
1575                 // extract out the output location
1576                 IPath outputLocation = null;
1577                 if (classpath != null && classpath.length > 0) {
1578                         IClasspathEntry entry = classpath[classpath.length - 1];
1579                         if (entry.getContentKind() == ClasspathEntry.K_OUTPUT) {
1580                                 outputLocation = entry.getPath();
1581                                 IClasspathEntry[] copy = new IClasspathEntry[classpath.length - 1];
1582                                 System.arraycopy(classpath, 0, copy, 0, copy.length);
1583                                 classpath = copy;
1584                         }
1585                 }
1586                 if (classpath == null) {
1587                         return defaultClasspath();
1588                 }
1589                 /* Disable validate: classpath can contain CP variables and container that need to be resolved
1590                 if (classpath != INVALID_CLASSPATH
1591                                 && !JavaConventions.validateClasspath(this, classpath, outputLocation).isOK()) {
1592                         classpath = INVALID_CLASSPATH;
1593                 }
1594                 */
1595                 perProjectInfo.classpath = classpath;
1596                 perProjectInfo.outputLocation = outputLocation;
1597                 return classpath;
1598         }
1599
1600         /**
1601          * @see IJavaProject#getRequiredProjectNames
1602          */
1603         public String[] getRequiredProjectNames() throws JavaModelException {
1604
1605                 return this.projectPrerequisites(getResolvedClasspath(true));
1606         }
1607
1608         /**
1609          * @see IJavaProject
1610          */
1611         public IClasspathEntry[] getResolvedClasspath(boolean ignoreUnresolvedEntry)
1612                 throws JavaModelException {
1613
1614                 return
1615                         this.getResolvedClasspath(
1616                                 ignoreUnresolvedEntry,
1617                                 false); // generateMarkerOnError
1618         }
1619
1620         /**
1621          * Internal variant which can create marker on project for invalid entries
1622          * and caches the resolved classpath on perProjectInfo
1623          */
1624         public IClasspathEntry[] getResolvedClasspath(
1625                 boolean ignoreUnresolvedEntry,
1626                 boolean generateMarkerOnError)
1627                 throws JavaModelException {
1628
1629                 JavaModelManager manager = JavaModelManager.getJavaModelManager();
1630                 JavaModelManager.PerProjectInfo perProjectInfo = manager.getPerProjectInfoCheckExistence(fProject);
1631
1632                 // reuse cache if not needing to refresh markers or checking bound variables
1633                 if (ignoreUnresolvedEntry && !generateMarkerOnError && perProjectInfo != null){
1634                         // resolved path is cached on its info
1635                         IClasspathEntry[] infoPath = perProjectInfo.lastResolvedClasspath;
1636                         if (infoPath != null) return infoPath;
1637                 }
1638                 Map reverseMap = perProjectInfo == null ? null : new HashMap(5);
1639                 IClasspathEntry[] resolvedPath = getResolvedClasspath(
1640                         getRawClasspath(),
1641                         generateMarkerOnError ? getOutputLocation() : null,
1642                         ignoreUnresolvedEntry,
1643                         generateMarkerOnError,
1644                         reverseMap);
1645
1646                 if (perProjectInfo != null){
1647                         if (perProjectInfo.classpath == null // .classpath file could not be read
1648                                 && generateMarkerOnError
1649                                 && JavaProject.hasJavaNature(fProject)) {
1650                                         this.createClasspathProblemMarker(new JavaModelStatus(
1651                                                 IJavaModelStatusConstants.INVALID_CLASSPATH_FILE_FORMAT,
1652                                                 Util.bind("classpath.cannotReadClasspathFile", this.getElementName()))); //$NON-NLS-1$
1653                                 }
1654
1655                         perProjectInfo.lastResolvedClasspath = resolvedPath;
1656                         perProjectInfo.resolvedPathToRawEntries = reverseMap;
1657                 }
1658                 return resolvedPath;
1659         }
1660
1661         /**
1662          * Internal variant which can process any arbitrary classpath
1663          */
1664         public IClasspathEntry[] getResolvedClasspath(
1665                 IClasspathEntry[] classpathEntries,
1666                 IPath projectOutputLocation, // only set if needing full classpath validation (and markers)
1667                 boolean ignoreUnresolvedEntry, // if unresolved entries are met, should it trigger initializations
1668                 boolean generateMarkerOnError,
1669                 Map reverseMap) // can be null if not interested in reverse mapping
1670                 throws JavaModelException {
1671
1672                 IJavaModelStatus status;
1673                 if (generateMarkerOnError){
1674                         flushClasspathProblemMarkers(false, false);
1675                 }
1676
1677                 int length = classpathEntries.length;
1678                 ArrayList resolvedEntries = new ArrayList();
1679
1680                 for (int i = 0; i < length; i++) {
1681
1682                         IClasspathEntry rawEntry = classpathEntries[i];
1683                         IPath resolvedPath;
1684                         status = null;
1685
1686                         /* validation if needed */
1687 //                      if (generateMarkerOnError || !ignoreUnresolvedEntry) {
1688 //                              status = JavaConventions.validateClasspathEntry(this, rawEntry, false);
1689 //                              if (generateMarkerOnError && !status.isOK()) createClasspathProblemMarker(status);
1690 //                      }
1691
1692                         switch (rawEntry.getEntryKind()){
1693
1694                                 case IClasspathEntry.CPE_VARIABLE :
1695
1696                                         IClasspathEntry resolvedEntry = PHPCore.getResolvedClasspathEntry(rawEntry);
1697                                         if (resolvedEntry == null) {
1698                                                 if (!ignoreUnresolvedEntry) throw new JavaModelException(status);
1699                                         } else {
1700                                                 if (reverseMap != null && reverseMap.get(resolvedPath = resolvedEntry.getPath()) == null) reverseMap.put(resolvedPath , rawEntry);
1701                                                 resolvedEntries.add(resolvedEntry);
1702                                         }
1703                                         break;
1704
1705 //                              case IClasspathEntry.CPE_CONTAINER :
1706 //
1707 //                                      IClasspathContainer container = PHPCore.getClasspathContainer(rawEntry.getPath(), this);
1708 //                                      if (container == null){
1709 //                                              if (!ignoreUnresolvedEntry) throw new JavaModelException(status);
1710 //                                              break;
1711 //                                      }
1712 //
1713 //                                      IClasspathEntry[] containerEntries = container.getClasspathEntries();
1714 //                                      if (containerEntries == null) break;
1715 //
1716 //                                      // container was bound
1717 //                                      for (int j = 0, containerLength = containerEntries.length; j < containerLength; j++){
1718 //                                              IClasspathEntry cEntry = containerEntries[j];
1719 //
1720 //                                              if (generateMarkerOnError) {
1721 //                                                      IJavaModelStatus containerStatus = JavaConventions.validateClasspathEntry(this, cEntry, false);
1722 //                                                      if (!containerStatus.isOK()) createClasspathProblemMarker(containerStatus);
1723 //                                              }
1724 //                                              // if container is exported, then its nested entries must in turn be exported  (21749)
1725 //                                              if (rawEntry.isExported()){
1726 //                                                      cEntry = new ClasspathEntry(cEntry.getContentKind(),
1727 //                                                              cEntry.getEntryKind(), cEntry.getPath(),
1728 //                                                              cEntry.getExclusionPatterns(), cEntry.getSourceAttachmentPath(),
1729 //                                                              cEntry.getSourceAttachmentRootPath(), cEntry.getOutputLocation(),
1730 //                                                              true); // duplicate container entry for tagging it as exported
1731 //                                              }
1732 //                                              if (reverseMap != null && reverseMap.get(resolvedPath = cEntry.getPath()) == null) reverseMap.put(resolvedPath, rawEntry);
1733 //                                              resolvedEntries.add(cEntry);
1734 //                                      }
1735 //                                      break;
1736
1737                                 default :
1738
1739                                         if (reverseMap != null && reverseMap.get(resolvedPath = rawEntry.getPath()) == null) reverseMap.put(resolvedPath, rawEntry);
1740                                         resolvedEntries.add(rawEntry);
1741
1742                         }
1743                 }
1744
1745                 IClasspathEntry[] resolvedPath = new IClasspathEntry[resolvedEntries.size()];
1746                 resolvedEntries.toArray(resolvedPath);
1747
1748 //              if (generateMarkerOnError && projectOutputLocation != null) {
1749 //                      status = JavaConventions.validateClasspath(this, resolvedPath, projectOutputLocation);
1750 //                      if (!status.isOK()) createClasspathProblemMarker(status);
1751 //              }
1752                 return resolvedPath;
1753         }
1754
1755         /*
1756          * @see IJavaElement
1757          */
1758         public IResource getResource() {
1759                 return this.getProject();
1760         }
1761
1762         /**
1763          * @see IJavaProject
1764          */
1765         public ISearchableNameEnvironment getSearchableNameEnvironment()
1766                 throws JavaModelException {
1767
1768                 JavaProjectElementInfo info = getJavaProjectElementInfo();
1769                 if (info.getSearchableEnvironment() == null) {
1770                         info.setSearchableEnvironment(new SearchableEnvironment(this));
1771                 }
1772                 return info.getSearchableEnvironment();
1773         }
1774
1775         /**
1776          * Retrieve a shared property on a project. If the property is not defined, answers null.
1777          * Note that it is orthogonal to IResource persistent properties, and client code has to decide
1778          * which form of storage to use appropriately. Shared properties produce real resource files which
1779          * can be shared through a VCM onto a server. Persistent properties are not shareable.
1780          *
1781          * @see JavaProject#setSharedProperty(String, String)
1782          */
1783         public String getSharedProperty(String key) throws CoreException {
1784
1785                 String property = null;
1786                 IFile rscFile = getProject().getFile(key);
1787                 if (rscFile.exists()) {
1788                         property = new String(Util.getResourceContentsAsByteArray(rscFile));
1789                 }
1790                 return property;
1791         }
1792
1793         /**
1794          * @see JavaElement
1795          */
1796 //      public SourceMapper getSourceMapper() {
1797 //
1798 //              return null;
1799 //      }
1800
1801         /**
1802          * @see IJavaElement
1803          */
1804         public IResource getUnderlyingResource() throws JavaModelException {
1805                 if (!exists()) throw newNotPresentException();
1806                 return getProject();
1807         }
1808
1809         /**
1810          * @see IJavaProject
1811          */
1812         public boolean hasBuildState() {
1813
1814                 return JavaModelManager.getJavaModelManager().getLastBuiltState(this.getProject(), null) != null;
1815         }
1816
1817         /**
1818          * @see IJavaProject
1819          */
1820         public boolean hasClasspathCycle(IClasspathEntry[] preferredClasspath) {
1821                 HashSet cycleParticipants = new HashSet();
1822                 updateCycleParticipants(preferredClasspath, new ArrayList(2), cycleParticipants, ResourcesPlugin.getWorkspace().getRoot(), new HashSet(2));
1823                 return !cycleParticipants.isEmpty();
1824         }
1825
1826         public boolean hasCycleMarker(){
1827                 return this.getCycleMarker() != null;
1828         }
1829
1830         public int hashCode() {
1831                 return fProject.hashCode();
1832         }
1833
1834         /**
1835          * Returns true if the given project is accessible and it has
1836          * a java nature, otherwise false.
1837          */
1838         public static boolean hasJavaNature(IProject project) {
1839                 try {
1840                         return project.hasNature(PHPeclipsePlugin.PHP_NATURE_ID);
1841                 } catch (CoreException e) {
1842                         // project does not exist or is not open
1843                 }
1844                 return false;
1845         }
1846
1847         /**
1848          * Answers true if the project potentially contains any source. A project which has no source is immutable.
1849          */
1850         public boolean hasSource() {
1851
1852                 // look if any source folder on the classpath
1853                 // no need for resolved path given source folder cannot be abstracted
1854                 IClasspathEntry[] entries;
1855                 try {
1856                         entries = this.getRawClasspath();
1857                 } catch (JavaModelException e) {
1858                         return true; // unsure
1859                 }
1860                 for (int i = 0, max = entries.length; i < max; i++) {
1861                         if (entries[i].getEntryKind() == IClasspathEntry.CPE_SOURCE) {
1862                                 return true;
1863                         }
1864                 }
1865                 return false;
1866         }
1867
1868         /**
1869          * Compare current classpath with given one to see if any different.
1870          * Note that the argument classpath contains its binary output.
1871          */
1872         public boolean isClasspathEqualsTo(IClasspathEntry[] newClasspath, IPath newOutputLocation, IClasspathEntry[] otherClasspathWithOutput)
1873                 throws JavaModelException {
1874
1875                 if (otherClasspathWithOutput != null && otherClasspathWithOutput.length > 0) {
1876
1877                         int length = otherClasspathWithOutput.length;
1878                         if (length == newClasspath.length + 1) {
1879                                 // output is amongst file entries (last one)
1880
1881                                 // compare classpath entries
1882                                 for (int i = 0; i < length - 1; i++) {
1883                                         if (!otherClasspathWithOutput[i].equals(newClasspath[i]))
1884                                                 return false;
1885                                 }
1886                                 // compare binary outputs
1887                                 IClasspathEntry output = otherClasspathWithOutput[length - 1];
1888                                 if (output.getContentKind() == ClasspathEntry.K_OUTPUT
1889                                                 && output.getPath().equals(newOutputLocation))
1890                                         return true;
1891                         }
1892                 }
1893                 return false;
1894         }
1895
1896
1897
1898         /*
1899          * @see IJavaProject
1900          */
1901         public boolean isOnClasspath(IJavaElement element) {
1902                 IPath path = element.getPath();
1903                 switch (element.getElementType()) {
1904                         case IJavaElement.PACKAGE_FRAGMENT_ROOT:
1905                                 if (!((IPackageFragmentRoot)element).isArchive()) {
1906                                         // ensure that folders are only excluded if all of their children are excluded
1907                                         path = path.append("*"); //$NON-NLS-1$
1908                                 }
1909                                 break;
1910                         case IJavaElement.PACKAGE_FRAGMENT:
1911                                 if (!((IPackageFragmentRoot)element.getParent()).isArchive()) {
1912                                         // ensure that folders are only excluded if all of their children are excluded
1913                                         path = path.append("*"); //$NON-NLS-1$
1914                                 }
1915                                 break;
1916                 }
1917                 return this.isOnClasspath(path);
1918         }
1919         private boolean isOnClasspath(IPath path) {
1920                 IClasspathEntry[] classpath;
1921                 try {
1922                         classpath = this.getResolvedClasspath(true/*ignore unresolved variable*/);
1923                 } catch(JavaModelException e){
1924                         return false; // not a Java project
1925                 }
1926                 for (int i = 0; i < classpath.length; i++) {
1927                         IClasspathEntry entry = classpath[i];
1928                         if (entry.getPath().isPrefixOf(path)
1929                                         && !Util.isExcluded(path, ((ClasspathEntry)entry).fullExclusionPatternChars())) {
1930                                 return true;
1931                         }
1932                 }
1933                 return false;
1934         }
1935         /*
1936          * @see IJavaProject
1937          */
1938         public boolean isOnClasspath(IResource resource) {
1939                 IPath path = resource.getFullPath();
1940
1941                 // ensure that folders are only excluded if all of their children are excluded
1942                 if (resource.getType() == IResource.FOLDER) {
1943                         path = path.append("*"); //$NON-NLS-1$
1944                 }
1945
1946                 return this.isOnClasspath(path);
1947         }
1948
1949
1950         /*
1951          * load preferences from a shareable format (VCM-wise)
1952          */
1953          public Preferences loadPreferences() {
1954
1955                 Preferences preferences = new Preferences();
1956
1957 //              File prefFile = getProject().getLocation().append(PREF_FILENAME).toFile();
1958                 IPath projectMetaLocation = getProject().getPluginWorkingLocation(PHPCore.getPlugin().getDescriptor());
1959                 if (projectMetaLocation != null) {
1960                         File prefFile = projectMetaLocation.append(PREF_FILENAME).toFile();
1961                         if (prefFile.exists()) { // load preferences from file
1962                                 InputStream in = null;
1963                                 try {
1964                                         in = new BufferedInputStream(new FileInputStream(prefFile));
1965                                         preferences.load(in);
1966                                         return preferences;
1967                                 } catch (IOException e) { // problems loading preference store - quietly ignore
1968                                 } finally {
1969                                         if (in != null) {
1970                                                 try {
1971                                                         in.close();
1972                                                 } catch (IOException e) { // ignore problems with close
1973                                                 }
1974                                         }
1975                                 }
1976                         }
1977                 }
1978                 return null;
1979          }
1980
1981         /**
1982          * @see IJavaProject#newEvaluationContext
1983          */
1984 //      public IEvaluationContext newEvaluationContext() {
1985 //
1986 //              return new EvaluationContextWrapper(new EvaluationContext(), this);
1987 //      }
1988
1989         /**
1990          * @see IJavaProject
1991          */
1992 //      public ITypeHierarchy newTypeHierarchy(
1993 //              IRegion region,
1994 //              IProgressMonitor monitor)
1995 //              throws JavaModelException {
1996 //
1997 //              if (region == null) {
1998 //                      throw new IllegalArgumentException(Util.bind("hierarchy.nullRegion"));//$NON-NLS-1$
1999 //              }
2000 //              CreateTypeHierarchyOperation op =
2001 //                      new CreateTypeHierarchyOperation(null, region, this, true);
2002 //              runOperation(op, monitor);
2003 //              return op.getResult();
2004 //      }
2005
2006         /**
2007          * @see IJavaProject
2008          */
2009 //      public ITypeHierarchy newTypeHierarchy(
2010 //              IType type,
2011 //              IRegion region,
2012 //              IProgressMonitor monitor)
2013 //              throws JavaModelException {
2014 //
2015 //              if (type == null) {
2016 //                      throw new IllegalArgumentException(Util.bind("hierarchy.nullFocusType"));//$NON-NLS-1$
2017 //              }
2018 //              if (region == null) {
2019 //                      throw new IllegalArgumentException(Util.bind("hierarchy.nullRegion"));//$NON-NLS-1$
2020 //              }
2021 //              CreateTypeHierarchyOperation op =
2022 //                      new CreateTypeHierarchyOperation(type, region, this, true);
2023 //              runOperation(op, monitor);
2024 //              return op.getResult();
2025 //      }
2026
2027         /**
2028          * Open project if resource isn't closed
2029          */
2030         protected void openWhenClosed(IProgressMonitor pm) throws JavaModelException {
2031
2032                 if (!this.fProject.isOpen()) {
2033                         throw newNotPresentException();
2034                 } else {
2035                         super.openWhenClosed(pm);
2036                 }
2037         }
2038
2039         public String[] projectPrerequisites(IClasspathEntry[] entries)
2040                 throws JavaModelException {
2041
2042                 ArrayList prerequisites = new ArrayList();
2043                 // need resolution
2044                 entries = getResolvedClasspath(entries, null, true, false, null/*no reverse map*/);
2045                 for (int i = 0, length = entries.length; i < length; i++) {
2046                         IClasspathEntry entry = entries[i];
2047                         if (entry.getEntryKind() == IClasspathEntry.CPE_PROJECT) {
2048                                 prerequisites.add(entry.getPath().lastSegment());
2049                         }
2050                 }
2051                 int size = prerequisites.size();
2052                 if (size == 0) {
2053                         return NO_PREREQUISITES;
2054                 } else {
2055                         String[] result = new String[size];
2056                         prerequisites.toArray(result);
2057                         return result;
2058                 }
2059         }
2060
2061
2062         /**
2063          * Reads the .classpath file from disk and returns the list of entries it contains (including output location entry)
2064          * Returns null if .classfile is not present.
2065          * Returns INVALID_CLASSPATH if it has a format problem.
2066          */
2067         protected IClasspathEntry[] readClasspathFile(boolean createMarker, boolean logProblems) {
2068
2069                 try {
2070                         String xmlClasspath = getSharedProperty(CLASSPATH_FILENAME);
2071                         if (xmlClasspath == null) return null;
2072                         return decodeClasspath(xmlClasspath, createMarker, logProblems);
2073                 } catch(CoreException e) {
2074                         // file does not exist (or not accessible)
2075                         if (createMarker && this.getProject().isAccessible()) {
2076                                         this.createClasspathProblemMarker(new JavaModelStatus(
2077                                                 IJavaModelStatusConstants.INVALID_CLASSPATH_FILE_FORMAT,
2078                                                 Util.bind("classpath.cannotReadClasspathFile", this.getElementName()))); //$NON-NLS-1$
2079                         }
2080                         if (logProblems) {
2081                                 Util.log(e,
2082                                         "Exception while retrieving "+ this.getPath() //$NON-NLS-1$
2083                                         +"/.classpath, will revert to default classpath"); //$NON-NLS-1$
2084                         }
2085                 }
2086                 return null;
2087         }
2088
2089         /**
2090          * Removes the given builder from the build spec for the given project.
2091          */
2092         protected void removeFromBuildSpec(String builderID) throws CoreException {
2093
2094                 IProjectDescription description = getProject().getDescription();
2095                 ICommand[] commands = description.getBuildSpec();
2096                 for (int i = 0; i < commands.length; ++i) {
2097                         if (commands[i].getBuilderName().equals(builderID)) {
2098                                 ICommand[] newCommands = new ICommand[commands.length - 1];
2099                                 System.arraycopy(commands, 0, newCommands, 0, i);
2100                                 System.arraycopy(commands, i + 1, newCommands, i, commands.length - i - 1);
2101                                 description.setBuildSpec(newCommands);
2102                                 getProject().setDescription(description, null);
2103                                 return;
2104                         }
2105                 }
2106         }
2107
2108
2109         /**
2110          * @see JavaElement#rootedAt(IJavaProject)
2111          */
2112         public IJavaElement rootedAt(IJavaProject project) {
2113                 return project;
2114
2115         }
2116
2117         /**
2118          * Answers an ID which is used to distinguish project/entries during package
2119          * fragment root computations
2120          */
2121         public String rootID(){
2122                 return "[PRJ]"+this.getProject().getFullPath(); //$NON-NLS-1$
2123         }
2124
2125         /**
2126          * Saves the classpath in a shareable format (VCM-wise) only when necessary, that is, if  it is semantically different
2127          * from the existing one in file. Will never write an identical one.
2128          *
2129          * @return Return whether the .classpath file was modified.
2130          */
2131         public boolean saveClasspath(IClasspathEntry[] newClasspath, IPath newOutputLocation) throws JavaModelException {
2132
2133                 if (!getProject().exists()) return false;
2134
2135                 IClasspathEntry[] fileEntries = readClasspathFile(false /*don't create markers*/, false/*don't log problems*/);
2136                 if (fileEntries != null && isClasspathEqualsTo(newClasspath, newOutputLocation, fileEntries)) {
2137                         // no need to save it, it is the same
2138                         return false;
2139                 }
2140
2141                 // actual file saving
2142                 try {
2143                         setSharedProperty(CLASSPATH_FILENAME, encodeClasspath(newClasspath, newOutputLocation, true));
2144                         return true;
2145                 } catch (CoreException e) {
2146                         throw new JavaModelException(e);
2147                 }
2148         }
2149
2150         /**
2151          * Save project custom preferences to shareable file (.jprefs)
2152          */
2153         private void savePreferences(Preferences preferences) {
2154
2155                 IProject project = getProject();
2156                 if (!JavaProject.hasJavaNature(project)) return; // ignore
2157
2158                 if (preferences == null || (!preferences.needsSaving() && preferences.propertyNames().length != 0)) {
2159                         // nothing to save
2160                         return;
2161                 }
2162
2163                 // preferences need to be saved
2164                 // the preferences file is located in the plug-in's state area
2165                 // at a well-known name (.jprefs)
2166 //              File prefFile = getProject().getLocation().append(PREF_FILENAME).toFile();
2167                 File prefFile = project.getPluginWorkingLocation(PHPCore.getPlugin().getDescriptor()).append(PREF_FILENAME).toFile();
2168                 if (preferences.propertyNames().length == 0) {
2169                         // there are no preference settings
2170                         // rather than write an empty file, just delete any existing file
2171                         if (prefFile.exists()) {
2172                                 prefFile.delete(); // don't worry if delete unsuccessful
2173                         }
2174                         return;
2175                 }
2176
2177                 // write file, overwriting an existing one
2178                 OutputStream out = null;
2179                 try {
2180                         // do it as carefully as we know how so that we don't lose/mangle
2181                         // the setting in times of stress
2182                         out = new BufferedOutputStream(new FileOutputStream(prefFile));
2183                         preferences.store(out, null);
2184                 } catch (IOException e) { // problems saving preference store - quietly ignore
2185                 } finally {
2186                         if (out != null) {
2187                                 try {
2188                                         out.close();
2189                                 } catch (IOException e) { // ignore problems with close
2190                                 }
2191                         }
2192                 }
2193         }
2194
2195         /**
2196          * Update the Java command in the build spec (replace existing one if present,
2197          * add one first if none).
2198          */
2199         private void setJavaCommand(
2200                 IProjectDescription description,
2201                 ICommand newCommand)
2202                 throws CoreException {
2203
2204                 ICommand[] oldCommands = description.getBuildSpec();
2205                 ICommand oldJavaCommand = getJavaCommand(description);
2206                 ICommand[] newCommands;
2207
2208                 if (oldJavaCommand == null) {
2209                         // Add a Java build spec before other builders (1FWJK7I)
2210                         newCommands = new ICommand[oldCommands.length + 1];
2211                         System.arraycopy(oldCommands, 0, newCommands, 1, oldCommands.length);
2212                         newCommands[0] = newCommand;
2213                 } else {
2214                         for (int i = 0, max = oldCommands.length; i < max; i++) {
2215                                 if (oldCommands[i] == oldJavaCommand) {
2216                                         oldCommands[i] = newCommand;
2217                                         break;
2218                                 }
2219                         }
2220                         newCommands = oldCommands;
2221                 }
2222
2223                 // Commit the spec change into the project
2224                 description.setBuildSpec(newCommands);
2225                 getProject().setDescription(description, null);
2226         }
2227
2228         /**
2229          * @see org.eclipse.jdt.core.IJavaProject#setOptions(Map)
2230          */
2231         public void setOptions(Map newOptions) {
2232
2233                 Preferences preferences;
2234                 setPreferences(preferences = new Preferences()); // always reset (26255)
2235                 if (newOptions != null){
2236                         Iterator keys = newOptions.keySet().iterator();
2237                         while (keys.hasNext()){
2238                                 String key = (String)keys.next();
2239                                 if (!JavaModelManager.OptionNames.contains(key)) continue; // unrecognized option
2240                                 // no filtering for encoding (custom encoding for project is allowed)
2241                                 String value = (String)newOptions.get(key);
2242                                 preferences.setDefault(key, CUSTOM_DEFAULT_OPTION_VALUE); // empty string isn't the default (26251)
2243                                 preferences.setValue(key, value);
2244                         }
2245                 }
2246
2247                 // persist options
2248                 savePreferences(preferences);
2249         }
2250
2251         /**
2252          * @see IJavaProject
2253          */
2254         public void setOutputLocation(IPath path, IProgressMonitor monitor)
2255                 throws JavaModelException {
2256
2257                 if (path == null) {
2258                         throw new IllegalArgumentException(Util.bind("path.nullpath")); //$NON-NLS-1$
2259                 }
2260                 if (path.equals(getOutputLocation())) {
2261                         return;
2262                 }
2263                 this.setRawClasspath(SetClasspathOperation.ReuseClasspath, path, monitor);
2264         }
2265
2266         /*
2267          * Set cached preferences, no preference file is saved, only info is updated
2268          */
2269         public void setPreferences(Preferences preferences) {
2270                 IProject project = getProject();
2271                 if (!JavaProject.hasJavaNature(project)) return; // ignore
2272                 JavaModelManager.PerProjectInfo perProjectInfo = JavaModelManager.getJavaModelManager().getPerProjectInfo(project, true);
2273                 perProjectInfo.preferences = preferences;
2274         }
2275
2276         /**
2277          * Sets the underlying kernel project of this Java project,
2278          * and fills in its parent and name.
2279          * Called by IProject.getNature().
2280          *
2281          * @see IProjectNature#setProject
2282          */
2283         public void setProject(IProject project) {
2284
2285                 fProject = project;
2286                 fParent = JavaModelManager.getJavaModelManager().getJavaModel();
2287                 fName = project.getName();
2288         }
2289
2290         /**
2291          * @see IJavaProject
2292          */
2293         public void setRawClasspath(
2294                 IClasspathEntry[] entries,
2295                 IPath outputLocation,
2296                 IProgressMonitor monitor)
2297                 throws JavaModelException {
2298
2299                 setRawClasspath(
2300                         entries,
2301                         outputLocation,
2302                         monitor,
2303                         true, // canChangeResource (as per API contract)
2304                         getResolvedClasspath(true), // ignoreUnresolvedVariable
2305                         true, // needValidation
2306                         true); // need to save
2307         }
2308
2309         public void setRawClasspath(
2310                 IClasspathEntry[] newEntries,
2311                 IPath newOutputLocation,
2312                 IProgressMonitor monitor,
2313                 boolean canChangeResource,
2314                 IClasspathEntry[] oldResolvedPath,
2315                 boolean needValidation,
2316                 boolean needSave)
2317                 throws JavaModelException {
2318
2319                 JavaModelManager manager =
2320                         (JavaModelManager) JavaModelManager.getJavaModelManager();
2321                 try {
2322                         IClasspathEntry[] newRawPath = newEntries;
2323                         if (newRawPath == null) { //are we already with the default classpath
2324                                 newRawPath = defaultClasspath();
2325                         }
2326                         SetClasspathOperation op =
2327                                 new SetClasspathOperation(
2328                                         this,
2329                                         oldResolvedPath,
2330                                         newRawPath,
2331                                         newOutputLocation,
2332                                         canChangeResource,
2333                                         needValidation,
2334                                         needSave);
2335                         runOperation(op, monitor);
2336
2337                 } catch (JavaModelException e) {
2338                         manager.flush();
2339                         throw e;
2340                 }
2341         }
2342
2343         /**
2344          * @see IJavaProject
2345          */
2346         public void setRawClasspath(
2347                 IClasspathEntry[] entries,
2348                 IProgressMonitor monitor)
2349                 throws JavaModelException {
2350
2351                 setRawClasspath(
2352                         entries,
2353                         SetClasspathOperation.ReuseOutputLocation,
2354                         monitor,
2355                         true, // canChangeResource (as per API contract)
2356                         getResolvedClasspath(true), // ignoreUnresolvedVariable
2357                         true, // needValidation
2358                         true); // need to save
2359         }
2360
2361         /**
2362          * NOTE: <code>null</code> specifies default classpath, and an empty
2363          * array specifies an empty classpath.
2364          *
2365          * @exception NotPresentException if this project does not exist.
2366          */
2367         protected void setRawClasspath0(IClasspathEntry[] rawEntries)
2368                 throws JavaModelException {
2369
2370                 JavaModelManager.PerProjectInfo info = JavaModelManager.getJavaModelManager().getPerProjectInfoCheckExistence(fProject);
2371
2372                 synchronized (info) {
2373                         if (rawEntries != null) {
2374                                 info.classpath = rawEntries;
2375                         }
2376
2377                         // clear cache of resolved classpath
2378                         info.lastResolvedClasspath = null;
2379                         info.resolvedPathToRawEntries = null;
2380                 }
2381         }
2382
2383         /**
2384          * Record a shared persistent property onto a project.
2385          * Note that it is orthogonal to IResource persistent properties, and client code has to decide
2386          * which form of storage to use appropriately. Shared properties produce real resource files which
2387          * can be shared through a VCM onto a server. Persistent properties are not shareable.
2388          *
2389          * shared properties end up in resource files, and thus cannot be modified during
2390          * delta notifications (a CoreException would then be thrown).
2391          *
2392          * @see JavaProject#getSharedProperty(String key)
2393          */
2394         public void setSharedProperty(String key, String value) throws CoreException {
2395
2396                 IFile rscFile = getProject().getFile(key);
2397                 InputStream inputStream = new ByteArrayInputStream(value.getBytes());
2398                 // update the resource content
2399                 if (rscFile.exists()) {
2400                         if (rscFile.isReadOnly()) {
2401                                 // provide opportunity to checkout read-only .classpath file (23984)
2402                                 ResourcesPlugin.getWorkspace().validateEdit(new IFile[]{rscFile}, null);
2403                         }
2404                         rscFile.setContents(inputStream, IResource.FORCE, null);
2405                 } else {
2406                         rscFile.create(inputStream, IResource.FORCE, null);
2407                 }
2408         }
2409
2410         /**
2411          * Update cycle markers for all java projects
2412          */
2413         public static void updateAllCycleMarkers() throws JavaModelException {
2414
2415                 //long start = System.currentTimeMillis();
2416
2417                 JavaModelManager manager = JavaModelManager.getJavaModelManager();
2418                 IJavaProject[] projects = manager.getJavaModel().getJavaProjects();
2419                 IWorkspaceRoot workspaceRoot = ResourcesPlugin.getWorkspace().getRoot();
2420
2421                 HashSet cycleParticipants = new HashSet();
2422                 HashSet traversed = new HashSet();
2423                 int length = projects.length;
2424
2425                 // compute cycle participants
2426                 ArrayList prereqChain = new ArrayList();
2427                 for (int i = 0; i < length; i++){
2428                         JavaProject project = (JavaProject)projects[i];
2429                         if (!traversed.contains(project.getPath())){
2430                                 prereqChain.clear();
2431                                 project.updateCycleParticipants(null, prereqChain, cycleParticipants, workspaceRoot, traversed);
2432                         }
2433                 }
2434                 //System.out.println("updateAllCycleMarkers: " + (System.currentTimeMillis() - start) + " ms");
2435
2436                 for (int i = 0; i < length; i++){
2437                         JavaProject project = (JavaProject)projects[i];
2438
2439                         if (cycleParticipants.contains(project.getPath())){
2440                                 IMarker cycleMarker = project.getCycleMarker();
2441                                 String circularCPOption = project.getOption(PHPCore.CORE_CIRCULAR_CLASSPATH, true);
2442                                 int circularCPSeverity = PHPCore.ERROR.equals(circularCPOption) ? IMarker.SEVERITY_ERROR : IMarker.SEVERITY_WARNING;
2443                                 if (cycleMarker != null) {
2444                                         // update existing cycle marker if needed
2445                                         try {
2446                                                 int existingSeverity = ((Integer)cycleMarker.getAttribute(IMarker.SEVERITY)).intValue();
2447                                                 if (existingSeverity != circularCPSeverity) {
2448                                                         cycleMarker.setAttribute(IMarker.SEVERITY, circularCPSeverity);
2449                                                 }
2450                                         } catch (CoreException e) {
2451                                                 throw new JavaModelException(e);
2452                                         }
2453                                 } else {
2454                                         // create new marker
2455                                         project.createClasspathProblemMarker(
2456                                                 new JavaModelStatus(IJavaModelStatusConstants.CLASSPATH_CYCLE, project));
2457                                 }
2458                         } else {
2459                                 project.flushClasspathProblemMarkers(true, false);
2460                         }
2461                 }
2462         }
2463
2464         /**
2465          * If a cycle is detected, then cycleParticipants contains all the paths of projects involved in this cycle (directly and indirectly),
2466          * no cycle if the set is empty (and started empty)
2467          */
2468         public void updateCycleParticipants(
2469                         IClasspathEntry[] preferredClasspath,
2470                         ArrayList prereqChain,
2471                         HashSet cycleParticipants,
2472                         IWorkspaceRoot workspaceRoot,
2473                         HashSet traversed){
2474
2475                 IPath path = this.getPath();
2476                 prereqChain.add(path);
2477                 traversed.add(path);
2478                 try {
2479                         IClasspathEntry[] classpath = preferredClasspath == null ? getResolvedClasspath(true) : preferredClasspath;
2480                         for (int i = 0, length = classpath.length; i < length; i++) {
2481                                 IClasspathEntry entry = classpath[i];
2482
2483                                 if (entry.getEntryKind() == IClasspathEntry.CPE_PROJECT){
2484                                         IPath prereqProjectPath = entry.getPath();
2485                                         int index = cycleParticipants.contains(prereqProjectPath) ? 0 : prereqChain.indexOf(prereqProjectPath);
2486                                         if (index >= 0) { // refer to cycle, or in cycle itself
2487                                                 for (int size = prereqChain.size(); index < size; index++) {
2488                                                         cycleParticipants.add(prereqChain.get(index));
2489                                                 }
2490                                         } else {
2491                                                 if (!traversed.contains(prereqProjectPath)) {
2492                                                         IResource member = workspaceRoot.findMember(prereqProjectPath);
2493                                                         if (member != null && member.getType() == IResource.PROJECT){
2494                                                                 JavaProject project = (JavaProject)PHPCore.create((IProject)member);
2495                                                                 project.updateCycleParticipants(null, prereqChain, cycleParticipants, workspaceRoot, traversed);
2496                                                         }
2497                                                 }
2498                                         }
2499                                 }
2500                         }
2501                 } catch(JavaModelException e){
2502                 }
2503                 prereqChain.remove(path);
2504         }
2505         /**
2506          * Reset the collection of package fragment roots (local ones) - only if opened.
2507          * Need to check *all* package fragment roots in order to reset NameLookup
2508          */
2509         public void updatePackageFragmentRoots(){
2510
2511                         if (this.isOpen()) {
2512                                 try {
2513                                         JavaProjectElementInfo info = getJavaProjectElementInfo();
2514
2515                                         IClasspathEntry[] classpath = getResolvedClasspath(true);
2516 //                                      NameLookup lookup = info.getNameLookup();
2517 //                                      if (lookup != null){
2518 //                                              IPackageFragmentRoot[] oldRoots = lookup.fPackageFragmentRoots;
2519 //                                              IPackageFragmentRoot[] newRoots = computePackageFragmentRoots(classpath, true);
2520 //                                              checkIdentical: { // compare all pkg fragment root lists
2521 //                                                      if (oldRoots.length == newRoots.length){
2522 //                                                              for (int i = 0, length = oldRoots.length; i < length; i++){
2523 //                                                                      if (!oldRoots[i].equals(newRoots[i])){
2524 //                                                                              break checkIdentical;
2525 //                                                                      }
2526 //                                                              }
2527 //                                                              return; // no need to update
2528 //                                                      }
2529 //                                              }
2530 //                                              info.setNameLookup(null); // discard name lookup (hold onto roots)
2531 //                                      }
2532                                         info.setNonJavaResources(null);
2533                                         info.setChildren(
2534                                                 computePackageFragmentRoots(classpath, false));
2535
2536                                 } catch(JavaModelException e){
2537                                         try {
2538                                                 close(); // could not do better
2539                                         } catch(JavaModelException ex){
2540                                         }
2541                                 }
2542                         }
2543         }
2544
2545                 public void removeLoadPathEntry(IProject anotherPHPProject) {
2546                         Iterator entries = getLoadPathEntries().iterator();
2547                         while (entries.hasNext()) {
2548                                 LoadPathEntry entry = (LoadPathEntry) entries.next();
2549                                 if (entry.getType() == LoadPathEntry.TYPE_PROJECT && entry.getProject().getName().equals(anotherPHPProject.getName())) {
2550                                         getLoadPathEntries().remove(entry);
2551                                         fScratched = true;
2552                                         break;
2553                                 }
2554                         }
2555                 }
2556
2557                 public void save() throws CoreException {
2558                         if (fScratched) {
2559                                 InputStream xmlPath = new ByteArrayInputStream(getLoadPathXML().getBytes());
2560                                 IFile loadPathsFile = getLoadPathEntriesFile();
2561                                 if (!loadPathsFile.exists())
2562                                         loadPathsFile.create(xmlPath, true, null);
2563                                 else
2564                                         loadPathsFile.setContents(xmlPath, true, false, null);
2565
2566                                 fScratched = false;
2567                         }
2568                 }
2569
2570 }